LL: Log-likelihood for mapping populations
In jendelman/MapRtools: Tools for genetic mapping
LL R Documentation
Log-likelihood for mapping populations
Description
Log-likelihood for mapping populations
Usage
LL(r, counts, pop.type)
Arguments
r
recombination frequency
counts
3x3 contingency table for haplotype dosages 0,1,2
pop.type
One of the following: "DH","BC","F2","S1r","RIL.self","RIL.sib"
Details
The argument counts can be constructed using the table function for two markers. Genotype coding must represent dosage of a founder haplotype. For BC populations, possible allele dosages are 0,1. For DH and RIL pops, it is 0,2. For F2 and S1 pops, it is 0,1,2. S1r is an S1 population with the 1 alleles in repulsion phase.
Value
log-likelihood
jendelman/MapRtools documentation built on April 12, 2025, 12:46 p.m.
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| LL | R Documentation |
Log-likelihood for mapping populations
Description
Log-likelihood for mapping populations
Usage
LL(r, counts, pop.type)
Arguments
r |
recombination frequency |
counts |
3x3 contingency table for haplotype dosages 0,1,2 |
pop.type |
One of the following: "DH","BC","F2","S1r","RIL.self","RIL.sib" |
Details
The argument counts can be constructed using the table function for two markers. Genotype coding must represent dosage of a founder haplotype. For BC populations, possible allele dosages are 0,1. For DH and RIL pops, it is 0,2. For F2 and S1 pops, it is 0,1,2. S1r is an S1 population with the 1 alleles in repulsion phase.
Value
log-likelihood
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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