rabbit_diallel: Make RABBIT input files for diploid diallel population
In jendelman/MapRtools: Tools for genetic mapping
View source: R/rabbit_diallel.R
rabbit_diallel R Documentation
Make RABBIT input files for diploid diallel population
Description
Make RABBIT input files for diploid diallel population
Usage
rabbit_diallel(ped, geno, geno.founder, map, outstem)
Arguments
ped
data frame with pedigree (pop,parent1,parent2)
geno
list of genotype matrices (markers x indiv), one for each population in ped
geno.founder
matrix of genotype data for the founders (markers x indiv)
map
genetic map (marker,chromosome,position)
outstem
name for output files
Details
Populations must be numbered in ped corresponding to their position in geno. Founders are not included in ped. All genotype matrices must have identical markers. Genetic map position should be in cM. Genotypes need to be coded according to RABBIT format.
jendelman/MapRtools documentation built on April 12, 2025, 12:46 p.m.
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View source: R/rabbit_diallel.R
| rabbit_diallel | R Documentation |
Make RABBIT input files for diploid diallel population
Description
Make RABBIT input files for diploid diallel population
Usage
rabbit_diallel(ped, geno, geno.founder, map, outstem)
Arguments
ped |
data frame with pedigree (pop,parent1,parent2) |
geno |
list of genotype matrices (markers x indiv), one for each population in |
geno.founder |
matrix of genotype data for the founders (markers x indiv) |
map |
genetic map (marker,chromosome,position) |
outstem |
name for output files |
Details
Populations must be numbered in ped corresponding to their position in geno. Founders are not included in ped. All genotype matrices must have identical markers. Genetic map position should be in cM. Genotypes need to be coded according to RABBIT format.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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