rabbit_read: Parse output from RABBIT MagicReconstruct
In jendelman/MapRtools: Tools for genetic mapping

rabbit_read

R Documentation

Parse output from RABBIT MagicReconstruct

Description

Parse output from RABBIT MagicReconstruct

Usage

rabbit_read(rabbit.file, ML.file = NULL, diaQTL.file = NULL)

Arguments

`rabbit.file`	name of RABBIT output file
`ML.file`	name of most likely genotype file to create
`diaQTL.file`	name of diaQTL genotype file to create

Details

Two different file formats can be created. The ML.file contains the most likely (i.e., posterior maximum) genotype for each individual at each marker. The diaQTL.file contains the full distribution of genotype probabilities in the format required by the diaQTL R package (diaQTL.file). The default value for each filename is NULL, which generates no file.