order_markers: Order markers by solving the TSP
In jendelman/MapRtools: Tools for genetic mapping
View source: R/order_markers.R
order_markers R Documentation
Order markers by solving the TSP
Description
Order markers by solving the TSP
Usage
order_markers(x)
Arguments
x
distance matrix
Details
Uses R package seriation to minimize the distance between adjacent markers. For example, x could be a matrix of recombination frequencies or monotone decreasing transformation of LOD scores.
Value
a list containing
- order
optimized order as a vector of integers
- distance
sum of adjacent distances
jendelman/MapRtools documentation built on April 12, 2025, 12:46 p.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
View source: R/order_markers.R
| order_markers | R Documentation |
Order markers by solving the TSP
Description
Order markers by solving the TSP
Usage
order_markers(x)
Arguments
x |
distance matrix |
Details
Uses R package seriation to minimize the distance between adjacent markers. For example, x could be a matrix of recombination frequencies or monotone decreasing transformation of LOD scores.
Value
a list containing
- order
optimized order as a vector of integers
- distance
sum of adjacent distances
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.