plot_map: Plot data against position and curate based on trend
In jendelman/MapRtools: Tools for genetic mapping
plot_map R Documentation
Plot data against position and curate based on trend
Description
Plot data against position and curate based on trend
Usage
plot_map(data, thresh = NULL, span = 0.3)
Arguments
data
data frame with 3 columns: chrom, position, plotting variable
thresh
threshold for removing markers (see Details)
span
smoothing parameter for loess spline (higher = less smooth)
Details
For data from a single chromosome, markers are removed when their residual to the fitted spline exceeds thresh. If NULL, no curation occurs.
Value
ggplot
List containing
- outliers
outlier positions
- plot
ggplot2 variable
jendelman/MapRtools documentation built on April 12, 2025, 12:46 p.m.
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| plot_map | R Documentation |
Plot data against position and curate based on trend
Description
Plot data against position and curate based on trend
Usage
plot_map(data, thresh = NULL, span = 0.3)
Arguments
data |
data frame with 3 columns: chrom, position, plotting variable |
thresh |
threshold for removing markers (see Details) |
span |
smoothing parameter for loess spline (higher = less smooth) |
Details
For data from a single chromosome, markers are removed when their residual to the fitted spline exceeds thresh. If NULL, no curation occurs.
Value
ggplot
List containing
- outliers
outlier positions
- plot
ggplot2 variable
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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