Files in jgarces02/FlowCT

A semi-automated workflow for deconvolution of immunophenotypic data and objective reporting on large datasets

R/barplot.cell.pops.R R/batch.removal.R R/boxplot.cell.clustering.R R/cell.count.bx.R R/circ.tree.R R/clustering.flow.R R/clusters.rename.R R/combine.subclusterings.R R/cor.plot.conditions.R R/coxregs.R R/dim.reduction.R R/dotplot.DE.R R/dr.plotting.R R/dumbPlot.R R/export.metaFCS.R R/fcs.SCE.R R/flowplot.R R/loading.R R/marker.names.R R/marker.normalization.R R/median.dr.R R/median.heatmap.R R/median.values.R R/multidensity.R R/parallel.plot.R R/pop.cutoff.R R/prog.pop.selection.R R/qc.and.removeDoublets.R R/read.FCSset.R R/remove.pop.R R/rpart.tree.R R/sc.Heatmap.R R/scMetadata.fromFCS.R R/scale.exprs.R R/sub.samples.R R/surv.plot.R R/surv.tree.R R/unify.FCSheaders.R R/utilities.R README.md batchRenaming_script/linux/README.md batchRenaming_script/windows/README.md man/as.flowSet.SE.Rd man/asciify.Rd man/barplot.cell.pops.Rd man/batch.removal.Rd man/boxplot.cell.clustering.Rd man/cell.count.bx.Rd man/circ.tree.Rd man/clustering.flow.Rd man/clusters.rename.Rd man/col.annot.pheatmap.Rd man/combine.subclusterings.Rd man/corplot.conditions.Rd man/cox.plot.rd man/dim.reduction.Rd man/div.colors.Rd man/dotplot.DE.Rd man/dr.plotting.Rd man/dumbPlot.Rd man/export.metaFCS.Rd man/fcs.SCE.Rd man/flowplot.Rd man/marker.names.Rd man/marker.normalization.Rd man/median.dr.Rd man/median.heatmap.Rd man/median.values.Rd man/multicox.Rd man/multidensity.Rd man/parallel.plot.Rd man/pop.cutoff.Rd man/prog.pop.selection.Rd man/qc.and.removeDoublets.Rd man/read.FCSset.Rd man/remove.pop.Rd man/rpart.tree.rd man/sc.heatmap.Rd man/scMetadata.fromFCS.Rd man/scale.exprs.Rd man/sub.samples.Rd man/surv.plot.Rd man/surv.tree.rd man/unicox.Rd man/unify.FCSheaders.Rd tutorial.md