median.values: Obtain median values

In jgarces02/FlowCT: A semi-automated workflow for deconvolution of immunophenotypic data and objective reporting on large datasets

Obtain median values

Description

It calculates median values according a specfied variable, normaly "filename".

Usage

## S3 method for class 'values'
median(fcs.SCE, assay.i = "raw", var = "filename")

Arguments

fcs.SCE	A fcs.SCE object generated through FlowCT::fcs.SCE().
assay.i	Name of matrix stored in the fcs.SCE object from which calculate medians. Default = "raw".
var	Variable for grouping and calculating medians. Default = "filename" (i.e., names of FCS files).

Examples

## Not run: 
mfis_FCS <- median.values(fcs.SCE = fcs)
med_SOM_clust <- median.values(fcs.SCE = fcs, assay.i = "normalized", var = "SOM_named")

## End(Not run)

jgarces02/FlowCT documentation built on March 28, 2023, 12:42 p.m.