jianhong/GeneNetworkBuilder: GeneNetworkBuilder: a bioconductor package for building regulatory network using ChIP-chip/ChIP-seq data and Gene Expression Data
Appliation for discovering direct or indirect targets of transcription factors using ChIP-chip or ChIP-seq, and microarray or RNA-seq gene expression data. Inputting a list of genes of potential targets of one TF from ChIP-chip or ChIP-seq, and the gene expression results, GeneNetworkBuilder generates a regulatory network of the TF.
Getting started
Browse package contents
Package details |
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| Author | Jianhong Ou, Haibo Liu, Heidi A Tissenbaum and Lihua Julie Zhu |
| Bioconductor views | GraphAndNetwork Microarray Sequencing |
| Maintainer | Jianhong Ou <jianhong.ou@duke.edu> |
| License | GPL (>= 2) |
| Version | 1.49.0 |
| Package repository | View on GitHub |
| Installation |
Install the latest version of this package by entering the following in R:
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