Files in jjellis/GenomicVis
Genomic Visualisation Routines
DESCRIPTION
NAMESPACE
R/GenomicVis-package.R
R/PlotBAF.R
R/PlotCNA.R
R/PlotLRR.R
R/PlotSV.R
R/chromosome.palette.R
R/cnv.heatmap.R
R/cnv.merge.R
R/cnv.plot.R
R/default.cnv.heatmap.colour.map.R
R/filter.breakdancer.R
R/find.kataegis.R
R/find.kataegis.helper.R
R/find.kataegis.pcf.R
R/find.kataegis.pcf.helper.R
R/gap2cnv.R
R/genes.in.region.R
R/genomic.distance.R
R/get.segments.R
R/heatmap.categorical.R
R/kataegis.R
R/kataegis.colours.R
R/list.vcffiles.R
R/plot.kataegisList.R
R/plotKataegis.R
R/plotSNVHeatmap.R
R/prepare.data.R
R/print.kataegisList.R
R/read.breakdancer.R
R/read.gap.R
R/read.illumina.R
R/read.snpeff.vcf.R
R/read.snpeff.vcfs.R
R/read.vcf.R
R/reduceWithin.R
R/snv.clustering.R
R/snv.heatmap.R
R/summarise.mutations.R
R/vcf.venn.R
README.md
build/vignette.rds
data/CNVData.rda
data/CNVExample.rda
data/KataegisExample.rda
data/SNPExample.rda
data/SVExample.rda
data/datalist
data/hg19Genes.rda
inst/doc/GenomicVis.R
inst/doc/GenomicVis.Rnw
inst/doc/GenomicVis.pdf
inst/extdata/CN_BA_Illumina_MySeries.chr18.txt
inst/extdata/Illum660K_annot_cut.chr18.csv
inst/extdata/LC1_A.snpeff.vcf
inst/extdata/LC1_B.snpeff.vcf
inst/extdata/LC1_C.snpeff.vcf
inst/extdata/LC1_D.snpeff.vcf
inst/extdata/LC1_TUMOUR_A.vcf
inst/extdata/LC1_TUMOUR_B.vcf
inst/extdata/LC2_TUMOUR_A.vcf
inst/extdata/LC2_TUMOUR_B.vcf
inst/extdata/LC3_BLOOD_TUMOUR_C.chr18.txt
inst/extdata/LC3_TUMOUR_A.vcf
inst/extdata/LC3_TUMOUR_B.vcf
inst/extdata/LC3_TUMOUR_C_FinalReport.chr18.txt
inst/extdata/example.vcf
man/CNVData.Rd
man/CNVExample.Rd
man/GenomicVis.Rd
man/KataegisExample.Rd
man/SNPExample.Rd
man/SVExample.Rd
man/cnv.heatmap.Rd
man/cnv.merge.Rd
man/cnv.plot.Rd
man/default.cnv.heatmap.colour.map.Rd
man/filter.breakdancer.Rd
man/gap2cnv.Rd
man/genes.in.region.Rd
man/hg19Genes.Rd
man/kataegis.Rd
man/kataegis.colours.Rd
man/list.vcffiles.Rd
man/plot.kataegisList.Rd
man/plotKataegis.Rd
man/prepare.data.Rd
man/print.kataegisList.Rd
man/read.breakdancer.Rd
man/read.gap.Rd
man/read.illumina.Rd
man/read.snpeff.vcf.Rd
man/read.snpeff.vcfs.Rd
man/read.vcf.Rd
man/snv.clustering.Rd
man/snv.heatmap.Rd
man/summarise.mutations.Rd
man/vcf.venn.Rd
vignettes/GenomicVis.Rnw
vignettes/cnvPlot.pdf
vignettes/venn.pdf
