Files in jlaffy/infercna
Infer Copy Number Alterations And Clonality In (Single-Cell) RNA-seq Data

DESCRIPTION

NAMESPACE

R/bt771.R R/cnaCor.R R/cnaHotspotCells.R R/cnaHotspotGenes.R R/cnaParamsPlot.R R/cnaScatterPlot.R R/cnaSignal.R R/filterGenes.R R/findClones.R R/findMalignant.R R/fitBimodal.R R/fitModal.R R/ggcna.R R/infercna.R R/mgh125.R R/modality.R R/orderGenes.R R/refCells.R R/refCorrect.R R/splitCellsBySample.R R/splitGenes.R

R/sysdata.rda

R/theme_scalop.R R/useData.R R/useGenome.R R/utils-fitBimodal.R R/utils-infercna.R R/utils-pipe.R R/utils-useGenome.R README.Rmd README.md

_pkgdown.yaml

data-raw/genes.rda

data-raw/retrieve_genome_info.R data-raw/setGenv.R data-raw/set_sysdata.R

data/bt771.rda

data/mgh105.rda

data/mgh125.rda

data/refCells.rda

docs/404.html

docs/LICENSE.html

docs/articles/index.html

docs/articles/infercna.html

docs/articles/infercna_files/figure-html/unnamed-chunk-15-1.png

docs/articles/infercna_tutorial.html

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docs/articles/infercna_tutorial_files/figure-html/unnamed-chunk-9-3.png

docs/articles/infercna_tutorial_files/figure-html/unnamed-chunk-9-4.png

docs/articles/useGenome.html

docs/authors.html

docs/docsearch.css

docs/docsearch.js

docs/index.html

docs/link.svg

docs/pkgdown.css

docs/pkgdown.js

docs/pkgdown.yml

docs/reference/addGenome.html

docs/reference/availableGenomes.html

docs/reference/bt771.html

docs/reference/clip.html

docs/reference/cnaCor.html

docs/reference/cnaHotspotGenes.html

docs/reference/cnaPlot.html

docs/reference/cnaScatterPlot.html

docs/reference/cnaSignal.html

docs/reference/colCenter.html

docs/reference/currentGenome.html

docs/reference/expandToClones.html

docs/reference/fetchModes.html

docs/reference/figures/README-pressure-1.png

docs/reference/filterGenes.html

docs/reference/findClones.html

docs/reference/findMalignant.html

docs/reference/fitBimodal.html

docs/reference/genesOn.html

docs/reference/index.html

docs/reference/infercna.html

docs/reference/mgh125.html

docs/reference/modality.html

docs/reference/orderGenes.html

docs/reference/pipe.html

docs/reference/refCells.html

docs/reference/refCorrect.html

docs/reference/retrieveGenome.html

docs/reference/rowCenter.html

docs/reference/runMean.html

docs/reference/splitGenes.html

docs/reference/useData.html

docs/reference/useGenome.html

docs/sitemap.xml

man/addGenome.Rd man/availableGenomes.Rd man/bt771.Rd man/clip.Rd man/cnaCor.Rd man/cnaHotspotCells.Rd man/cnaHotspotGenes.Rd man/cnaParamsPlot.Rd man/cnaScatterPlot.Rd man/cnaSignal.Rd man/currentGenome.Rd man/expandToClones.Rd man/fetchModes.Rd

man/figures/README-pressure-1.png

man/filterGenes.Rd man/findClones.Rd man/findMalignant.Rd man/fitBimodal.Rd man/fitModal.Rd man/genesOn.Rd man/ggcna.Rd man/infercna.Rd man/mgh125.Rd man/modality.Rd man/orderGenes.Rd man/pipe.Rd man/reexports.Rd man/refCells.Rd man/refCorrect.Rd man/retrieveGenome.Rd man/runMean.Rd man/splitGenes.Rd man/theme_scalop.Rd man/useData.Rd man/useGenome.Rd vignettes/infercna.Rmd vignettes/infercna_tutorial.Rmd

vignettes/infercna_tutorial_files/figure-html/unnamed-chunk-4-1.png

vignettes/infercna_tutorial_files/figure-html/unnamed-chunk-5-1.png

vignettes/infercna_tutorial_files/figure-html/unnamed-chunk-9-1.png

vignettes/infercna_tutorial_files/figure-html/unnamed-chunk-9-2.png

vignettes/useGenome.Rmd

jlaffy/infercna documentation built on Jan. 26, 2024, 11:24 p.m.

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jlaffy/infercna
Infer Copy Number Alterations And Clonality In (Single-Cell) RNA-seq Data

Files in jlaffy/infercna
Infer Copy Number Alterations And Clonality In (Single-Cell) RNA-seq Data

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jlaffy/infercna Infer Copy Number Alterations And Clonality In (Single-Cell) RNA-seq Data

Files in jlaffy/infercna Infer Copy Number Alterations And Clonality In (Single-Cell) RNA-seq Data

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jlaffy/infercna
Infer Copy Number Alterations And Clonality In (Single-Cell) RNA-seq Data

Files in jlaffy/infercna
Infer Copy Number Alterations And Clonality In (Single-Cell) RNA-seq Data