aggr_gene_expr: log-Average expression of genes across all cells
In jlaffy/scalop: Single Cell Analysis Operations
aggr_gene_expr R Documentation
log-Average expression of genes across all cells
Description
Often used as a QC parameter for genes in scRNA-seq data, usually once the LQ cells have been removed. The matrix is converted to TPM space from logTPM (more specifically, from log2(TPM/10 + 1)), gene averages are calculated and finally the values are converted back to log2(TPM + 1), without dividing by 10 since the data is now simulated bulk.
Usage
aggr_gene_expr(m, na.rm = T, isBulk = FALSE)
Arguments
m
matrix of expression values to test
jlaffy/scalop documentation built on March 24, 2024, 9 a.m.
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| aggr_gene_expr | R Documentation |
log-Average expression of genes across all cells
Description
Often used as a QC parameter for genes in scRNA-seq data, usually once the LQ cells have been removed. The matrix is converted to TPM space from logTPM (more specifically, from log2(TPM/10 + 1)), gene averages are calculated and finally the values are converted back to log2(TPM + 1), without dividing by 10 since the data is now simulated bulk.
Usage
aggr_gene_expr(m, na.rm = T, isBulk = FALSE)
Arguments
m |
matrix of expression values to test |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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