API for jlaffy/scalop
Single Cell Analysis Operations

Global functions
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%<-%	Man page
%>%	Man page
.add_cols	Source code
.add_rows	Source code
.arg_is_args	Source code
.axis.spacer	Source code Source code
.check_arg	Source code
.check_args_exist	Source code
.check_missing	Source code Source code
.check_sample_size	Source code
.cluster_size	Source code
.equalize_grob_dim	Source code
.filter_sigs	Source code
.fitBimodalBySampling	Source code
.hca	Source code
.hca_cor	Source code
.hca_cutree	Source code
.hca_cutree_as_list	Source code
.hca_dist	Source code
.hca_tree	Source code
.is_grob	Source code
.jaccard	Source code
.limit	Source code Source code
.limits	Source code Source code
.marrangegrob	Source code
.match_bins	Source code
.name_binIDs	Source code
.overlap	Source code
.prepare_mat	Source code
.sample_bins	Source code
.score	Source code
.sigScores	Source code
.which_to_grob	Source code
GGsave	Source code
GeneInfo	Man page Source code
Jaccard	Man page Source code
MGH136	Man page
Markers_Normal	Man page
NormalBrainSignatures2	Man page
NormalBrainSignatures3	Man page
NormalSignatures	Man page
Overlap	Man page Source code
Sapply	Man page Source code
Unlist	Man page Source code
about_equal	Source code
add_to_dataframe	Man page Source code
aggr_dup_genes	Man page Source code
aggr_gene_expr	Man page Source code
alias2ensembl	Man page
alias2entrez	Man page
alias2refseq	Man page
alias2symbol	Man page
alias2ucsc	Man page
allowedExons	Man page Source code
annomap	Man page Source code
anova	Source code
as_bulk	Man page Source code
as_bulk_samples	Man page Source code
as_four_state_gbm	Man page Source code
assign_bulk_states	Man page Source code
baseScores	Man page Source code
bin	Man page Source code
binmatch	Man page Source code
bootstrap_summary	Man page Source code
bootstrapped_state_fractions	Man page Source code
checkfac	Source code
cluster.methods	Man page
col_subset	Man page Source code
colcenter	Man page Source code
coldetected	Man page Source code
combine_group2_dea	Man page Source code
comply	Man page Source code
cor.methods	Man page
coxfilter	Source code
cpm	Man page Source code
cv	Source code
dea	Man page Source code
dea_order	Source code
dea_sort	Source code
dims	Man page Source code
discrete_colours	Man page
dist.methods	Man page
doubletCells	Man page Source code
enricher	Man page Source code
ensembl2symbol	Man page
entrez2alias	Man page
entrez2ensembl	Man page
entrez2refseq	Man page
entrez2symbol	Man page
entrez2ucsc	Man page
expr_housekeeping	Man page Source code
filter_signatures	Man page Source code
filter_sigs	Man page Source code
fitBimodal	Man page Source code
flip	Man page Source code
foldchange	Man page Source code
foldchange.NULL	Source code
foldchange.character	Source code
foldchange.default	Source code
foldchange.matrix	Source code
frac_mito	Man page Source code
futurama	Man page
geneLength	Man page Source code
gene_alias2many	Source code
gene_atype2many	Source code
gene_ensembl2many	Source code
gene_id2many	Source code
gene_id2refseq	Source code
gene_id2symbol	Source code
gene_refseq2many	Source code
gene_symbol2id	Source code
gene_symbol2many	Source code
genericModel	Man page Source code
getGRCh	Man page Source code
get_ensembl	Man page
get_entrez	Man page
get_genes	Man page Source code
get_refseq	Man page
get_signatures	Man page Source code
get_snn_graph_clusters	Man page Source code
get_symbols	Man page
get_ucsc	Man page
ggDensity	Man page Source code
ggmap	Man page Source code Source code
ggoutliers	Man page Source code
ggpubr	Man page
ggraster	Source code
ggvolcano	Man page Source code
gmap	Man page Source code
graster	Man page Source code
grombine	Man page Source code
grouped_reorder	Man page Source code
grouped_rowcenter	Man page Source code
has_dim	Source code
have_equal_dims	Source code
have_equal_nrows	Source code
have_equal_rownames	Source code
hca	Man page Source code
hca_cor	Man page Source code
hca_dist	Man page Source code
hca_groups	Man page Source code
hca_order	Man page Source code
hca_reorder	Man page Source code
hca_tree	Man page Source code
headl	Man page Source code
headr	Man page Source code
hierarchy	Man page Source code
hms_span	Man page Source code
is_accnum	Man page
is_alias	Man page
is_annotation	Man page Source code
is_cor	Source code
is_ensembl	Man page
is_entrez	Man page
is_number	Source code
is_p_value	Source code
is_refseq	Man page
is_square	Source code
is_symbol	Man page
is_symm	Source code
is_ucsc	Man page
jacFilt	Man page Source code
jaccard	Source code
jacmap	Man page Source code
kOverA	Source code
ldcast	Man page Source code
logRowMeans	Man page Source code
logcpm	Man page Source code
logtpm	Man page Source code
makefac	Source code
map_alias	Man page
map_ensembl	Man page
map_entrez	Man page
map_genes	Man page Source code
map_refseq	Man page
map_symbol	Man page
markerScores	Man page Source code
mat01	Man page Source code
maxA	Source code
maxcol_strict	Man page Source code
metaprograms	Man page Source code
msigdb	Man page Source code
nSigGenes	Man page Source code
ncols	Man page Source code
nrows	Man page Source code
ntop	Man page Source code
ohmySNNclusters	Man page Source code
ohmyqc	Man page Source code
ohmytsne	Man page Source code
outliers	Man page Source code
pOverA	Source code
pairup	Man page Source code
pal19	Man page
pal28	Man page
palG34R	Man page
pca	Man page Source code
plot_hierarchy	Man page Source code
program_variability	Source code
program_variability.data.frame	Source code
programs	Man page Source code
range_rowmeans	Man page Source code
refseq2alias	Man page
refseq2ensembl	Man page
refseq2entrez	Man page
refseq2symbol	Man page
refseq2ucsc	Man page
row_subset	Man page Source code
rowcenter	Man page Source code
rowcolFt	Source code
rowcoltt	Source code
rowdetected	Man page Source code
sample_strict	Man page Source code
scdata	Man page
score	Man page Source code
setColNames	Man page Source code
setRowNames	Man page Source code
sigScores	Man page Source code
simpsons	Man page
sort_by	Source code
split_matrix	Source code
state_fractions	Man page Source code
state_high_genes	Man page Source code
subsplit	Man page Source code
substri	Man page Source code
symbol2alias	Man page
symbol2ensembl	Man page
symbol2entrez	Man page
symbol2refseq	Man page
symbol2ucsc	Man page
taill	Man page Source code
tailr	Man page Source code
textxy	Source code
theme_scalop	Man page Source code
top	Source code
top.data.frame	Source code
top.default	Source code
top.numeric	Source code
totalExons	Man page Source code
tpm	Man page Source code
ttest	Source code
ucsc2alias	Man page
ucsc2ensembl	Man page
ucsc2entrez	Man page
ucsc2refseq	Man page
ucsc2symbol	Man page
unique_sample_names	Man page Source code
unlogcpm	Man page Source code
unlogtpm	Man page Source code
vannomap	Man page Source code
volcano_plot	Source code
which_annotation	Man page Source code
wilcoxtest	Man page Source code
wilcoxtest.NULL	Source code
wilcoxtest.character	Source code
wilcoxtest.default	Source code
wilcoxtest.matrix	Source code
x2y	Man page Source code
x_in_y_overA	Source code