API for jlaffy/scalop
Single Cell Analysis Operations

Global functions
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.add_cols Source code
.add_rows Source code
.arg_is_args Source code
.axis.spacer Source code
.check_arg Source code
.check_args_exist Source code
.check_missing Source code Source code
.check_sample_size Source code
.cluster_size Source code
.equalize_grob_dim Source code
.filter_sigs Source code
.fitBimodalBySampling Source code
.hca Source code
.hca_cor Source code
.hca_cutree Source code
.hca_cutree_as_list Source code
.hca_dist Source code
.hca_tree Source code
.is_grob Source code
.jaccard Source code
.limit Source code
.limits Source code
.marrangegrob Source code
.match_bins Source code
.name_binIDs Source code
.prepare_mat Source code
.sample_bins Source code
.score Source code
.sigScores Source code
.which_to_grob Source code
GeneInfo Man page Source code
Markers_Normal Man page
NormalBrainSignatures Man page
NormalBrainSignatures2 Man page
NormalBrainSignatures3 Man page
NormalSignatures Man page
Sapply Man page Source code
Unlist Man page Source code
about_equal Source code
add_to_dataframe Man page Source code
aggr_gene_expr Man page Source code
annomap Man page Source code
anova Source code
as_bulk Man page Source code
as_bulk_samples Man page Source code
as_four_state_gbm Man page Source code
assign_bulk_states Man page Source code
baseScores Man page Source code
bin Man page Source code
binmatch Man page Source code
bootstrap_summary Man page Source code
bootstrapped_state_fractions Man page Source code
checkfac Source code
cluster.methods Man page
colcenter Man page Source code
coldetected Man page Source code
combine_group2_dea Man page Source code
comply Man page Source code
cor.methods Man page
coxfilter Source code
cpm Man page Source code
cv Source code
dea Man page Source code
dea_order Source code
dea_sort Source code
dims Man page Source code
discrete_colours Man page
dist.methods Man page
doubletCells Man page Source code
enricher Man page Source code
ensembl2symbol Man page
expr_housekeeping Man page Source code
extract_sample_names Man page Source code
extract_substring Man page Source code
filter_signatures Man page Source code
filter_sigs Man page Source code
fitBimodal Man page Source code
flip Man page Source code
foldchange Man page Source code
foldchange.NULL Source code
foldchange.character Source code
foldchange.default Source code
foldchange.matrix Source code
frac_mito Man page Source code
futurama Man page
gene_alias2many Source code
gene_atype2many Source code
gene_ensembl2many Source code
gene_id2many Source code
gene_id2refseq Source code
gene_id2symbol Source code
gene_refseq2many Source code
gene_symbol2id Source code
gene_symbol2many Source code
genericModel Man page Source code
getGRCh Man page Source code
get_signatures Man page Source code
get_snn_graph_clusters Man page Source code
ggDensity Man page Source code
ggmap Man page Source code
ggoutliers Man page Source code
ggpubr Man page
ggvolcano Man page Source code
gmap Man page Source code
grombine Man page Source code
grouped_reorder Man page Source code
grouped_rowcenter Man page Source code
has_dim Source code
have_equal_dims Source code
have_equal_nrows Source code
have_equal_rownames Source code
hca Man page Source code
hca_cor Man page Source code
hca_dist Man page Source code
hca_groups Man page Source code
hca_order Man page Source code
hca_reorder Man page Source code
hca_tree Man page Source code
headl Man page Source code
headr Man page Source code
hierarchy Man page Source code
hms_span Man page Source code
is_cor Source code
is_number Source code
is_p_value Source code
is_square Source code
is_symm Source code
jacFilt Man page Source code
jaccard Man page Source code
jacmap Man page Source code
kOverA Source code
ldcast Man page Source code
logRowMeans Man page Source code
logcpm Man page Source code
logtpm Man page Source code
makefac Source code
markerScores Man page Source code
mat01 Man page Source code
maxA Source code
maxcol_strict Man page Source code
metaprograms Man page Source code
nSigGenes Man page Source code
ncols Man page Source code
nrows Man page Source code
ohmySNNclusters Man page Source code
ohmyqc Man page Source code
ohmytsne Man page Source code
outliers Man page Source code
pOverA Source code
pal19 Man page
pal28 Man page
palG34R Man page
pca Man page Source code
plot_hierarchy Man page Source code
program_variability Source code
program_variability.data.frame Source code
programs Man page Source code
range_rowmeans Man page Source code
rowcenter Man page Source code
rowcolFt Source code
rowcoltt Source code
rowdetected Man page Source code
sample_strict Man page Source code
scdata Man page
score Man page Source code
setColNames Man page Source code
setRowNames Man page Source code
sigScores Man page Source code
simpsons Man page
sort_by Source code
split_by_sample_names Man page Source code
split_by_substring Man page Source code
split_matrix Source code
state_fractions Man page Source code
state_high_genes Man page Source code
taill Man page Source code
tailr Man page Source code
top Source code
top.data.frame Source code
top.default Source code
top.numeric Source code
tpm Man page Source code
ttest Source code
unique_sample_names Man page Source code
unlogcpm Man page Source code
unlogtpm Man page Source code
vannomap Man page Source code
volcano_plot Source code
wilcoxtest Man page Source code
wilcoxtest.NULL Source code
wilcoxtest.character Source code
wilcoxtest.default Source code
wilcoxtest.matrix Source code
x_in_y_overA Source code
jlaffy/scalop documentation built on June 16, 2020, 3:46 p.m.