jacmap: Convert a list to a jaccard matrix and plot with...

In jlaffy/scalop: Single Cell Analysis Operations

Convert a list to a jaccard matrix and plot with 'scalop::gmap'

Description

Convert a list to a jaccard matrix and plot with 'scalop::gmap'

Usage

jacmap(
  L = NULL,
  L2 = NULL,
  m = NULL,
  ratio = 1,
  limits = c(0, 1),
  tile.col = "black",
  tile.size = 0.1,
  cols = c("white", "darkred"),
  num = FALSE,
  angle = T,
  ...,
  tiletext = FALSE,
  dcp = 1
)

Arguments

L	list of character vectors to compute jaccard indexes between.
ratio	aspect ratio. Default: 1
limits	colour key limits. Default: c(0, 1)
tile.col	draw lines between tiles. Default: 'black'
tile.size	draw lines between tiles. Default: 0.1
cols	colours for key. Default: c("white", "darkred")
num	numeric (TRUE) or character (FALSE) x- and y- axes labels. Default: FALSE
angle	angle x-axis labels. Default: T
...	other arguments passed to 'scalop::gmap'
tiletext	write jaccard indexes on tiles? Default: FALSE
dcp	relevant if tiletext is TRUE. How many decimal places to show? Default: 1

Value

ggplot object

See Also

melt geom_label

jlaffy/scalop documentation built on March 24, 2024, 9 a.m.