Files in jlaffy/scalop
Single Cell Analysis Operations

.Rbuildignore
.Rprofile
.gitignore
.travis.yml
DESCRIPTION
LICENSE
LICENSE.md
NAMESPACE
R/.DS_Store
R/AllGenerics.R R/GeneInfo.R R/Markers_Normal.R R/NormalBrainSignatures.R R/NormalBrainSignatures2.R R/NormalBrainSignatures3.R R/NormalSignatures.R R/Unlist.R R/add_to_dataframe.R R/all-stats.R R/annomap.R R/as_bulk.R R/as_four_state_gbm.R R/assign_bulk_states.R R/bin.R R/cluster.methods.R R/combine_group2_dea.R R/comply.R R/cor.methods.R R/cpm.R R/dea.R R/deaOrder.R R/discrete_colours-data.R R/dist.methods.R R/doubletCells.R R/enricher.R R/ensembl2symbol.R R/extract_sample_names.R R/extract_substring.R R/filter_signatures.R R/fitBimodal.R R/flip.R R/foldchange.R R/futurama-data.R R/genericModel.R R/getGRCh.R R/get_signatures.R R/get_snn_graph_clusters.R R/ggdensity.R R/ggoutliers.R R/ggpubr-data.R R/ggvolcano.R R/gmap.R R/grombine.R R/grouped_reorder.R R/grouped_rowcenter.R R/hca.R R/hierarchy.R R/hms_span.R R/id2many.R R/jacFilt.R R/jaccard.R R/jacmap.R R/ldcast.R R/logRowMeans.R R/mat01.R R/matrix-ops.R R/maxcol_strict.R R/metaprograms.R R/nSigGenes.R R/ohmySNNclusters.R R/ohmyqc.R R/ohmytsne.R R/outliers.R R/pal19-data.R R/pal28-data.R R/palG34R-data.R R/pca.R R/plot_hierarchy.R R/program_variability.R R/programs.R R/qc.R R/range_rowmeans.R R/rowttests-methods.R R/sample_strict.R R/scdata.R R/score.R R/setColNames.R R/setRowNames.R R/sigScores.R R/simpsons-data.R R/split_by_sample_names.R R/split_by_substring.R R/state_fractions.R R/state_high_genes.R
R/sysdata.rda
R/tpm.R R/unique_sample_names.R R/utils-bin.R R/utils-fitBimodal.R R/utils-grombine.R R/utils-hca.R R/utils.R R/vannomap.R R/volcano_plot.R R/wilcoxtest.R
_pkgdown.yml
data/Markers_Normal.rda
data/NormalBrainSignatures.rda
data/NormalBrainSignatures2.rda
data/NormalBrainSignatures3.rda
data/NormalSignatures.rda
data/SignaturesList.rda
data/Signatures_Campbell2017.rda
data/Signatures_GBM.rda
data/Signatures_H3_K27M.rda
data/Signatures_Habib2016.rda
data/Signatures_IDH_A.rda
data/Signatures_IDH_O.rda
data/Signatures_Melanoma.rda
data/Signatures_Pollen2015.rda
data/Signatures_TCGA_GBM.rda
data/Signatures_TabulaMuris2016.rda
data/cluster.methods.rda
data/cor.methods.rda
data/discrete_colours.rda
data/dist.methods.rda
data/ensembl2symbol.rda
data/futurama.rda
data/ggpubr.rda
data/pal19.rda
data/pal28.rda
data/palG34R.rda
data/scdata.rda
data/simpsons.rda
docs/404.html
docs/LICENSE-text.html
docs/LICENSE.html
docs/authors.html
docs/docsearch.css
docs/docsearch.js
docs/index.html
docs/link.svg
docs/pkgdown.css
docs/pkgdown.js
docs/pkgdown.yml
docs/reference/index.html
extdata/Brain_Non-Myeloid_Marker_Genes.R
extdata/README
man/GeneInfo.Rd man/Markers_Normal.Rd man/NormalBrainSignatures.Rd man/NormalBrainSignatures2.Rd man/NormalBrainSignatures3.Rd man/NormalSignatures.Rd man/Sapply.Rd man/Unlist.Rd man/add_to_dataframe.Rd man/aggr_gene_expr.Rd man/annomap.Rd man/as_bulk.Rd man/as_bulk_samples.Rd man/as_four_state_gbm.Rd man/assign_bulk_states.Rd man/baseScores.Rd man/bin.Rd man/binmatch.Rd man/bootstrap_summary.Rd man/bootstrapped_state_fractions.Rd man/cluster.methods.Rd man/colcenter.Rd man/coldetected.Rd man/combine_group2_dea.Rd man/comply.Rd man/cor.methods.Rd man/cpm.Rd man/dea.Rd man/dims.Rd man/discrete_colours.Rd man/dist.methods.Rd man/doubletCells.Rd man/enricher.Rd man/ensembl2symbol.Rd man/expr_housekeeping.Rd man/extract_sample_names.Rd man/extract_substring.Rd man/filter_signatures.Rd man/filter_sigs.Rd man/fitBimodal.Rd man/flip.Rd man/foldchange.Rd man/frac_mito.Rd man/futurama.Rd man/genericModel.Rd man/getGRCh.Rd man/get_signatures.Rd man/get_snn_graph_clusters.Rd man/ggDensity.Rd man/ggmap.Rd man/ggoutliers.Rd man/ggpubr.Rd man/ggvolcano.Rd man/gmap.Rd man/grombine.Rd man/grouped_reorder.Rd man/grouped_rowcenter.Rd man/hca.Rd man/headl.Rd man/headr.Rd man/hierarchy.Rd man/hms_span.Rd man/jacFilt.Rd man/jaccard.Rd man/jacmap.Rd man/ldcast.Rd man/logRowMeans.Rd man/logcpm.Rd man/markerScores.Rd man/mat01.Rd man/maxcol_strict.Rd man/metaprograms.Rd man/nSigGenes.Rd man/ncols.Rd man/nrows.Rd man/ohmySNNclusters.Rd man/ohmyqc.Rd man/ohmytsne.Rd man/outliers.Rd man/pal19.Rd man/pal28.Rd man/palG34R.Rd man/pca.Rd man/pipe.Rd man/plot_hierarchy.Rd man/programs.Rd man/range_rowmeans.Rd man/rowcenter.Rd man/rowdetected.Rd man/sample_strict.Rd man/scdata.Rd man/score.Rd man/setColNames.Rd man/setRowNames.Rd man/sigScores.Rd man/simpsons.Rd man/split_by_sample_names.Rd man/split_by_substring.Rd man/state_fractions.Rd man/state_high_genes.Rd man/taill.Rd man/tailr.Rd man/tpm.Rd man/unique_sample_names.Rd man/unlogcpm.Rd man/unlogtpm.Rd man/unpack-assign-back.Rd man/unpack-assign.Rd man/vannomap.Rd man/wilcoxtest.Rd
ref_names_NormalBrainSignatures.rds
src/.gitignore
src/init.c
src/nd.c
src/rowttests.c
src/scalop.h
vignettes/.gitignore
jlaffy/scalop documentation built on June 16, 2020, 3:46 p.m.