markerScores: Score a Matrix with Marker Gene Sets Of Normal Cell Types

In jlaffy/scalop: Single Cell Analysis Operations

Score a Matrix with Marker Gene Sets Of Normal Cell Types

Description

Score a Matrix with Marker Gene Sets Of Normal Cell Types. Wrapper around scalop::sigScores. Please see '?scalop::sigScores' for more details

Usage

markerScores(m, ...)

Arguments

m	a non-centered matrix of genes X cells/samples. The matrix will be row-centered internally prior to scoring.
...	other arguments passed to scalop::sigScores, although none are required.

Details

the gene sets can be seen in Markers_Normal

Value

a dataframe of cell/sample scores. Each column describes scores for a different Marker Gene Set.

jlaffy/scalop documentation built on March 24, 2024, 9 a.m.