annomap: One-bar annotation ggplot

In jlaffy/scalop: Single Cell Analysis Operations

One-bar annotation ggplot

Description

one-bar annotation ggplot

Usage

annomap(
  X,
  y.name = NULL,
  x.name = NULL,
  angle = F,
  num = T,
  flip = F,
  hide.legend = T,
  get.legend = F,
  legend.pos = "top",
  ratio = 0.03,
  tile.col = NULL,
  tile.size = 0.01,
  mar = 0.015,
  cols = NULL,
  limits = NULL,
  ncol = 1,
  patchwork = T,
  widths = c(9, 1),
  guides = "collect",
  ...
)

Arguments

X	named character vector of observations and groups (names); or a dataframe with first two columns as observations and groups.
angle	logical indicating whether to angle title if flip = T. Default: T
num	enumerate observations on x axis? Default: T
flip	observations along y axis instead of x? Default: F
hide.legend	logical. Default: T
legend.pos	character string. See legend.position in ggplot2::theme for details. Default: 'top'
ratio	aspect ratio. If flip = T, ratio = 1/ratio.. Default: 0.03
mar	see plot.margin in ggplot2::themes for details. Default: 0.015
cols	custom colour palette. Option to name colours by groups to choose individual group colours. Default: NULL
title	annomap title. Default: NULL
x.title	x axis (observations) title (e.g. 'cells'). Default: NULL
pal	numeric value specifying different qualitative brewer palettes. See ggplot2::scale_fill_brewer for details. Default: 1
breaks	set to NULL to remove x axis tick marks. Default: ggplot2::waiver()
cols.order	character vector with groups. Changing the order changes the assignment of colours to groups. Default: names(cols)

Value

ggplot

See Also

waiver,ggplot,scale_continuous,scale_x_discrete,geom_raster,ggtheme,theme,margin,scale_colour_brewer,scale_manual,coord_flip get_legend,rremove

jlaffy/scalop documentation built on March 24, 2024, 9 a.m.