frac_mito: Fraction of a Cell's Expression Level Coming From...
In jlaffy/scalop: Single Cell Analysis Operations
frac_mito R Documentation
Fraction of a Cell's Expression Level Coming From Mitochondrial Genes
Description
Often used as a QC parameter for cells in scRNA-seq data. The higher the fraction of mitochondrial expression (i.e. of expression coming from mitochondrial genes), the higher the implied level of stress a cell is in and by consequence the lower the assumed quality. In scRNAseq cancer data, a cutoff of 0.25 is often used although any individual value is always arbitrary and one is better off plotting the data. note: the list of mitochondrial genes are those that start with "MT".
Usage
frac_mito(m)
Arguments
m
matrix of expression values to test
jlaffy/scalop documentation built on March 24, 2024, 9 a.m.
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| frac_mito | R Documentation |
Fraction of a Cell's Expression Level Coming From Mitochondrial Genes
Description
Often used as a QC parameter for cells in scRNA-seq data. The higher the fraction of mitochondrial expression (i.e. of expression coming from mitochondrial genes), the higher the implied level of stress a cell is in and by consequence the lower the assumed quality. In scRNAseq cancer data, a cutoff of 0.25 is often used although any individual value is always arbitrary and one is better off plotting the data. note: the list of mitochondrial genes are those that start with "MT".
Usage
frac_mito(m)
Arguments
m |
matrix of expression values to test |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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