logcpm: Convert CPM to logCPM
In jlaffy/scalop: Single Cell Analysis Operations
logcpm R Documentation
Convert CPM to logCPM
Description
Convert CPM to logCPM, i.e. using log2(CPM/10 + 1).
Usage
logcpm(m, bulk = F)
Arguments
m
matrix of CPM values (gene rows; cell columns)
bulk
if bulk then instead uses log2(CPM + 1). i.e. no scaling. Default: F
Details
CPM/10 is used for single cells since 100,000 is a more reasonable estimate than 1,000,000 for the number of RNA transcripts in a cell. 1,000,000 is reasonable estimate for bulk samples that contain multiple cells.
Value
logCPM matrix
jlaffy/scalop documentation built on March 24, 2024, 9 a.m.
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| logcpm | R Documentation |
Convert CPM to logCPM
Description
Convert CPM to logCPM, i.e. using log2(CPM/10 + 1).
Usage
logcpm(m, bulk = F)
Arguments
m |
matrix of CPM values (gene rows; cell columns) |
bulk |
if bulk then instead uses log2(CPM + 1). i.e. no scaling. Default: F |
Details
CPM/10 is used for single cells since 100,000 is a more reasonable estimate than 1,000,000 for the number of RNA transcripts in a cell. 1,000,000 is reasonable estimate for bulk samples that contain multiple cells.
Value
logCPM matrix
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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