hierarchy: Cell state hierarchy coordinates
In jlaffy/scalop: Single Cell Analysis Operations
hierarchy R Documentation
Cell state hierarchy coordinates
Description
Cell state hierarchy coordinates
Usage
hierarchy(m, quadrants = NULL, log.scale = T)
Arguments
m
matrix of cell state scores (cell rows; state columns)
quadrants
option to find pmax of a subset of columns and use this as a state quadrant. pass argument in the form of a list of character vectors (column names), where list elements should start from bottom and go from left to right. Default: NULL
log.scale
scale the hierarchy coordinates in log2 space. Default: T
Value
dataframe with X and Y coordinate values.
mutate
jlaffy/scalop documentation built on March 24, 2024, 9 a.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
| hierarchy | R Documentation |
Cell state hierarchy coordinates
Description
Cell state hierarchy coordinates
Usage
hierarchy(m, quadrants = NULL, log.scale = T)
Arguments
m |
matrix of cell state scores (cell rows; state columns) |
quadrants |
option to find pmax of a subset of columns and use this as a state quadrant. pass argument in the form of a list of character vectors (column names), where list elements should start from bottom and go from left to right. Default: NULL |
log.scale |
scale the hierarchy coordinates in log2 space. Default: T |
Value
dataframe with X and Y coordinate values.
mutate
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.