ggoutliers: Plot model and Outliers

In jlaffy/scalop: Single Cell Analysis Operations

Plot model and Outliers

Description

Plot model and Outliers

Usage

ggoutliers(
  formula,
  data,
  mod = loess,
  n.sd = 1.5,
  ...,
  selected = NULL,
  add.to.selected = NULL,
  ngenes = 6,
  yvar.ngenes = ngenes,
  xvar.ngenes = ngenes,
  gene.min = 0.5,
  alt.min = 0.5,
  xlab.min = 0,
  ylab.min = 0,
  xlab.max = NULL,
  ylab.max = NULL,
  text.size = 16,
  legend.text.size = 12,
  label.size = 3.5,
  segment.colour = "grey85",
  segment.size = 0.15,
  min.segment.length = 0.5,
  nudge_y = 0,
  force = 5,
  xlab = all.vars(formula)[2],
  ylab = all.vars(formula)[1],
  selected.col = "red",
  subtitle = NULL,
  midline = TRUE,
  outerlines = FALSE,
  title = NULL,
  caption = NULL
)

Arguments

formula	PARAM_DESCRIPTION
data	PARAM_DESCRIPTION
mod	PARAM_DESCRIPTION, Default: loess
n.sd	PARAM_DESCRIPTION, Default: 1.5
...	PARAM_DESCRIPTION
selected	PARAM_DESCRIPTION, Default: NULL
add.to.selected	PARAM_DESCRIPTION, Default: NULL
ngenes	PARAM_DESCRIPTION, Default: 7
yvar.ngenes	PARAM_DESCRIPTION, Default: ngenes
xvar.ngenes	PARAM_DESCRIPTION, Default: ngenes
gene.min	PARAM_DESCRIPTION, Default: 3
alt.min	PARAM_DESCRIPTION, Default: 1
xlab.min	PARAM_DESCRIPTION, Default: 0
ylab.min	PARAM_DESCRIPTION, Default: 0
text.size	PARAM_DESCRIPTION, Default: 14
legend.text.size	PARAM_DESCRIPTION, Default: 12
label.size	PARAM_DESCRIPTION, Default: 5
force	PARAM_DESCRIPTION, Default: 20
xlab	PARAM_DESCRIPTION, Default: all.vars(formula)[2]
ylab	PARAM_DESCRIPTION, Default: all.vars(formula)[1]
selected.col	PARAM_DESCRIPTION, Default: 'red'
subtitle	PARAM_DESCRIPTION, Default: NULL
title	PARAM_DESCRIPTION, Default: NULL
caption	PARAM_DESCRIPTION, Default: NULL

Details

DETAILS

Value

OUTPUT_DESCRIPTION

See Also

mutate,filter,arrange,pull setNames ggplot,geom_point,geom_path,scale_continuous,ggtheme,scale_manual,theme geom_text_repel

Examples

## Not run: 
if(interactive()){
 #EXAMPLE1
 }

## End(Not run)

jlaffy/scalop documentation built on March 24, 2024, 9 a.m.