ohmyqc: Quality control statistics for single cell RNA seq data

In jlaffy/scalop: Single Cell Analysis Operations

Quality control statistics for single cell RNA seq data

Description

Quality control statistics for single cell RNA seq data

Usage

ohmyqc(m, mito.genes = rownames(m)[startsWith(rownames(m), "MT-")])

Arguments

m	expression matrix of genes by cells in non-log2 space e.g. CPM or TPM.
mito.genes	character vector of mitochondrial gene names. Default: rownames(m)[startsWith(rownames(m), "MT-")]

Value

dataframe with columns: cell, detected_genes, housekeeping_expr, mito_Frac

See Also

mapvalues

jlaffy/scalop documentation built on March 24, 2024, 9 a.m.