View source: R/plot_hierarchy.R
plot_hierarchy | R Documentation |
Plot state hierarchy
plot_hierarchy(
X,
quadrant.names = c("bl", "br", "tl", "tr"),
main = NULL,
xlab = "Relative meta-module score [log2(|SC1-SC2|+1)]",
ylab = "Relative meta-module score [log2(|SC1-SC2|+1)]",
groups = NULL,
group.cols = NULL,
legend = T,
legend.pos = "bottom",
legend.horiz = T
)
X |
two-column matrix or dataframe with x and y coordinates. |
quadrant.names |
character vector to label quadrants. Default: c("bl", "br", "tl", "tr") |
main |
plot title. Default: NULL |
xlab |
x-axis title. Default: 'Relative meta-module score [log2(|SC1-SC2|+1)]' |
ylab |
y-axis title. Default: 'Relative meta-module score [log2(|SC1-SC2|+1)]' |
groups |
a named character vector, where the vector corresponds to rownames in X and names are the groups to colour by. Default: NULL |
group.cols |
named character vector of colours to use for each group. Names should match names in groups. Default: NULL |
legend |
logical to draw legend if groups are provided. Default: T |
legend.pos |
legend position. Default: 'bottom' |
legend.horiz |
logical indicating whether legend should be horizontally drawn. Default: T |
base plot
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