Man pages for jlaffy/statistrics
Basic Statistics For Single-Cell (or bulk) RNA Analyses
| center | Centering |
| combine | Combine data from files |
| complexityCut | Filter cells by complexity cutoff |
| DEgenes | Differentially Expressed Genes Between Two Groups |
| detected | Cell complexity counter |
| fold_change | Fold Changes between Matrices |
| gene_means | Matrix Column/Row Means |
| genesCut | Filter genes by cutoff |
| hclean | Remove too big too small clusters |
| hcluster | Hierarchical clustering |
| hcorder | Order variables by hierarchical clustering |
| hcorr | Calculate (ordered) pairwise correlation matrix |
| hcsig | hcsig: hcluster Significance |
| hcsig_cut | Cluster Significance Cut |
| hcsim_cut | Cut filters based on jaccard similarity |
| hcutree | Get clusters from hc object by tree heights |
| jaccard | Jaccard Similarity |
| jaccard_filter | Vector Filtering by Jaccard Similarity |
| logTPM | Convert expression data from TPM to logTPM form. |
| main | Cell Clustering and Cluster Processing |
| makeFilename | Generate filename to match Cache files |
| most_significant | Single Most Significant Occurrences of Genes |
| ncutree | Get clusters from hc object by predefined cluster number |
| overlap | Basic Similarity (intersection value) |
| pairs_apply | Apply function to every pair between x and a list |
| pairs_apply_all | Apply function to every pair in a list |
| preprocess | PreProcess Expression Matrix |
| program | Programs |
| p_val | P-values between matrices |
| reexports | Objects exported from other packages |
| score | Program Scores |
| sig | Significance according to p-values of fold changes. |
| string | Generate one string from a list of strings |
| top_program_genes | Top Genes across Programs |
| TPM | Convert expression data from logTPM to TPM form. |
| try_apply | Title |
