hcsig_cut: Cluster Significance Cut

Description Usage Arguments Value

View source: R/utils-cluster-significance.R

Description

Cluster Significance Cut

Usage

1
hcsig_cut(obj, n.sig.1 = 50, n.sig.2 = 10, by = "both")

Arguments

obj

hcsig object. Please refer to statistrics::hcsig.

n.sig.1

significance cutoff for the number of significantly differentially expressed genes per cluster. Defaults to 50. Any clusters that do not pass this cutoff OR/AND that of n.sig.2 are filtered out.

n.sig.2

significance cutoff for the number of more significantly differentially expressed genes per cluster. Defaults to 10. Any clusters that do not pass this cutoff OR/AND that of n.sig.1 are filtered out.

by

cut based on scores for: 'sig.1', 'sig.2', 'either' or 'both'.

Value

an hcsig object (the same structure and data types as the input) filtered to include only significant clusters.


jlaffy/statistrics documentation built on May 23, 2019, 4:04 a.m.