Files in jlmelville/uwot
The Uniform Manifold Approximation and Projection (UMAP) Method for Dimensionality Reduction

.Rbuildignore
.github/.gitignore
.github/workflows/R-CMD-check.yaml
.github/workflows/lint.yaml
.github/workflows/test-coverage.yaml
.gitignore
DESCRIPTION
LICENSE
NAMESPACE
NEWS.md R/RcppExports.R R/affinity.R R/init.R R/neighbors.R R/supervised.R R/transform.R R/util.R R/uwot.R README.md
appveyor.yml
codecov.yml
cran-comments.md
docs/abparams.html
docs/abparams.md
docs/fast-sgd.html
docs/fast-sgd.md
docs/init.html
docs/init.md
docs/lvish.html
docs/lvish.md
docs/metric-learning.html
docs/metric-learning.md
docs/pycompare.html
docs/pycompare.md
docs/umap-examples.html
docs/umap-examples.md
docs/umap-for-tsne.html
docs/umap-for-tsne.md
docs/umap-simple.html
docs/umap-simple.md
img/abparams/coil20_a0.1b0.9.png
img/abparams/coil20_a0.5b0.9.png
img/abparams/coil20_a0.5b1.1.png
img/abparams/coil20_a1.58b0.9.png
img/abparams/mnist_a0.00001b0.9.png
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img/abparams/umap_ab_curve.png
img/examples/cifar10_tsne.png
img/examples/cifar10_tumaps.png
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img/examples/cifar10act_tsne.png
img/examples/cifar10act_umap.png
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img/examples/frey_tsne.png
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img/examples/iris_tsne.png
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img/examples/isofaces_tsne.png
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img/fast-sgd/fashion_fast.png
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img/fast-sgd/kuzushiji_fast.png
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img/fast-sgd/macosko2015_fast.png
img/fast-sgd/macosko2015_slow.png
img/fast-sgd/mnist_fast.png
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img/fast-sgd/norb150_fast.png
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img/fast-sgd/norb_42.png
img/fast-sgd/norb_5446.png
img/fast-sgd/norb_fast.png
img/fast-sgd/norb_slow.png
img/fast-sgd/tasic2018_fast.png
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img/init/coil100_agspectral.png
img/init/coil100_lvrand1.png
img/init/coil100_lvrand2.png
img/init/coil100_rand1.png
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img/init/coil100_spca.png
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img/init/coil100_spectral.png
img/init/coil20_agspectral.png
img/init/coil20_lvrand1.png
img/init/coil20_lvrand2.png
img/init/coil20_rand1.png
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img/init/coil20_spca.png
img/init/coil20_spca1.png
img/init/coil20_spca1e-2.png
img/init/coil20_spectral.png
img/init/fashion_agspectral.png
img/init/fashion_laplacian.png
img/init/fashion_lvrand1.png
img/init/fashion_lvrand2.png
img/init/fashion_rand1.png
img/init/fashion_rand2.png
img/init/fashion_spca.png
img/init/fashion_spca1.png
img/init/fashion_spca1e-2.png
img/init/fashion_spectral.png
img/init/frey_agspectral.png
img/init/frey_laplacian.png
img/init/frey_lvrand1.png
img/init/frey_lvrand2.png
img/init/frey_rand1.png
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img/init/frey_spca.png
img/init/frey_spca1.png
img/init/frey_spca1e-2.png
img/init/frey_spectral.png
img/init/iris_agspectral.png
img/init/iris_laplacian.png
img/init/iris_lvrand1.png
img/init/iris_lvrand2.png
img/init/iris_rand1.png
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img/init/iris_spca.png
img/init/iris_spca1.png
img/init/iris_spca1e-2.png
img/init/iris_spectral.png
img/init/kuzushiji_agspectral.png
img/init/kuzushiji_laplacian.png
img/init/kuzushiji_lvrand1.png
img/init/kuzushiji_lvrand2.png
img/init/kuzushiji_rand1.png
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img/init/kuzushiji_spca.png
img/init/kuzushiji_spca1.png
img/init/kuzushiji_spca1e-2.png
img/init/kuzushiji_spectral.png
img/init/macosko2015_agspectral.png
img/init/macosko2015_laplacian.png
img/init/macosko2015_lvrand1.png
img/init/macosko2015_lvrand2.png
img/init/macosko2015_rand1.png
img/init/macosko2015_rand2.png
img/init/macosko2015_spca.png
img/init/macosko2015_spca1.png
img/init/macosko2015_spca1e-2.png
img/init/macosko2015_spectral.png
img/init/mnist_agspectral.png
img/init/mnist_laplacian.png
img/init/mnist_lvrand1.png
img/init/mnist_lvrand2.png
img/init/mnist_rand1.png
img/init/mnist_rand2.png
img/init/mnist_spca.png
img/init/mnist_spca1.png
img/init/mnist_spca1e-2.png
img/init/mnist_spectral.png
img/init/norb_agspectral.png
img/init/norb_lvrand1.png
img/init/norb_lvrand2.png
img/init/norb_rand1.png
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img/init/norb_spca.png
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img/init/norb_spectral.png
img/init/oli_agspectral.png
img/init/oli_laplacian.png
img/init/oli_lvrand1.png
img/init/oli_lvrand2.png
img/init/oli_rand1.png
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img/init/oli_spca.png
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img/init/oli_spectral.png
img/init/s1k_agspectral.png
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img/init/s1k_lvrand1.png
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img/init/s1k_spectral.png
img/init/tasic2018_agspectral.png
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img/lv/coil100_p15.png
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img/lv/frey_p15.png
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img/lv/oli_p15.png
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img/metric-learning/dia_pca.png
img/metric-learning/dia_sumap.png
img/metric-learning/dia_umap.png
img/metric-learning/dia_umap_from_pca.png
img/metric-learning/sumap_fashion_all.png
img/metric-learning/sumap_fashion_test.png
img/metric-learning/sumap_fashion_train.png
img/metric-learning/umap_fashion_all.png
img/metric-learning/umap_fashion_test.png
img/metric-learning/umap_fashion_train.png
img/pycompare/cifar10_py.png
img/pycompare/cifar10_r.png
img/pycompare/coil100_py.png
img/pycompare/coil100_r.png
img/pycompare/coil20_py.png
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img/pycompare/fashion_nnhist.png
img/pycompare/fashion_py.png
img/pycompare/fashion_r.png
img/pycompare/frey_py.png
img/pycompare/frey_r.png
img/pycompare/iris_py.png
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img/pycompare/kuzushiji_py.png
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img/pycompare/macosko2015_nnhist.png
img/pycompare/macosko2015_py.png
img/pycompare/macosko2015_r.png
img/pycompare/macosko2015_rpynn.png
img/pycompare/macosko2015_tsne_nopca.png
img/pycompare/macosko2015_tsne_p50_nopca.png
img/pycompare/macosko2015_tsne_p50_pca50.png
img/pycompare/macosko2015_uwot_exactnn.png
img/pycompare/mnist_nnhist.png
img/pycompare/mnist_py.png
img/pycompare/mnist_r.png
img/pycompare/norb1152.png
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img/pycompare/norb_tsne_nopca.png
img/pycompare/norb_tsne_p50_nopca.png
img/pycompare/norb_tsne_p50_pca50.png
img/pycompare/oli_py.png
img/pycompare/oli_r.png
img/pycompare/s1k_py.png
img/pycompare/s1k_r.png
img/pycompare/tasic2018_nnhist.png
img/pycompare/tasic2018_py.png
img/pycompare/tasic2018_r.png
img/readme/mnist-largevis.png
img/readme/mnist-lvish.png
img/readme/mnist-py.png
img/readme/mnist-r.png
img/simple/100_blue_1000_orange.png
img/simple/100_blue_100_orange.png
img/simple/gauss100_nbrs100.png
img/simple/gauss100_nbrs3.png
img/simple/gauss100_nbrs30.png
img/simple/gauss100_nbrs50.png
img/simple/gauss100_nbrs6.png
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img/simple/gauss2d_nbrs100.png
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img/simple/gauss3_nbrs6.png
img/simple/gauss3_orig.png
img/simple/gauss_2long_nbrs100.png
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img/simple/gauss_2long_nbrs30.png
img/simple/gauss_2long_nbrs50.png
img/simple/gauss_2long_nbrs6.png
img/simple/gauss_2long_orig.png
img/simple/gauss_long_nbrs100.png
img/simple/gauss_long_nbrs3.png
img/simple/gauss_long_nbrs30.png
img/simple/gauss_long_nbrs50.png
img/simple/gauss_long_nbrs6.png
img/simple/gauss_long_orig.png
img/simple/gauss_scale_nbrs100.png
img/simple/gauss_scale_nbrs3.png
img/simple/gauss_scale_nbrs30.png
img/simple/gauss_scale_nbrs50.png
img/simple/gauss_scale_nbrs6.png
img/simple/gauss_scale_orig.png
img/simple/grid2d.png
img/simple/link_nbrs100.png
img/simple/link_nbrs3.png
img/simple/link_nbrs30.png
img/simple/link_nbrs50.png
img/simple/link_nbrs6.png
img/simple/link_orig.png
img/simple/subset_nbrs100.png
img/simple/subset_nbrs3.png
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img/simple/subset_orig.png
img/simple/trefoil_nbrs100.png
img/simple/trefoil_nbrs3.png
img/simple/trefoil_nbrs30.png
img/simple/trefoil_nbrs50.png
img/simple/trefoil_nbrs6.png
img/simple/trefoil_orig.png
inst/include/RcppPerpendicular.h
inst/include/uwot/connected_components.h
inst/include/uwot/coords.h
inst/include/uwot/epoch.h
inst/include/uwot/gradient.h
inst/include/uwot/matrix.h
inst/include/uwot/optimize.h
inst/include/uwot/perplexity.h
inst/include/uwot/sampler.h
inst/include/uwot/smooth_knn.h
inst/include/uwot/supervised.h
inst/include/uwot/tauprng.h
inst/include/uwot/transform.h
inst/include/uwot/update.h
man/load_uwot.Rd man/lvish.Rd man/save_uwot.Rd man/tumap.Rd man/umap.Rd man/umap_transform.Rd man/unload_uwot.Rd
revdep/.gitignore
revdep/email.yml
src/.gitignore
src/Makevars
src/RcppExports.cpp
src/connected_components.cpp
src/nn_parallel.cpp
src/nn_parallel.h
src/perplexity.cpp
src/r_uwot.cpp
src/rng.h
src/rparallel.h
src/rprogress.h
src/smooth_knn.cpp
src/supervised.cpp
src/thread.cpp
src/transform.cpp
tests/testthat.R tests/testthat/helper_data.R tests/testthat/helper_fuzzy_sets.R tests/testthat/test_curve.R tests/testthat/test_epochs.R tests/testthat/test_errors.R tests/testthat/test_fuzzy_simplicial_set.R tests/testthat/test_knn_aff.R tests/testthat/test_mixed_distances.R tests/testthat/test_neighbors.R tests/testthat/test_output.R tests/testthat/test_pca.R tests/testthat/test_perplexity.R tests/testthat/test_rand_init.R tests/testthat/test_saveload.R tests/testthat/test_scale.R tests/testthat/test_smooth_knn_dists.R tests/testthat/test_spectral.R tests/testthat/test_supervised.R tests/testthat/test_transform.R
jlmelville/uwot documentation built on Nov. 29, 2021, 5:38 a.m.