cnetplot_internalJam: cnetplot internal function

In jmw86069/multienrichjam: Analysis and Visualization of Multiple Gene Set Enrichments

cnetplot internal function

Description

cnetplot internal function

Usage

cnetplot_internalJam(
  inputList,
  categorySize = "geneNum",
  showCategory = 5,
  pvalue = NULL,
  foldChange = NULL,
  fixed = TRUE,
  DE.foldChange = NULL,
  categoryColor = "#E5C494",
  geneColor = "#B3B3B3",
  colorRamp = "RdBu_r",
  ...
)

Details

This function is intended to mimic the DOSE:::cnetplot_internal() function to support cnetplotJam() customizations, including not plotting the output, and including additional custom igraph attributes.

See Also

Other jam igraph functions: cnet2df(), cnet2im(), cnetplotJam(), color_edges_by_nodegroups(), color_edges_by_nodes_deprecated(), color_edges_by_nodes(), color_nodes_by_nodegroups(), communities2nodegroups(), drawEllipse(), edge_bundle_bipartite(), edge_bundle_nodegroups(), enrichMapJam(), fixSetLabels(), flip_edges(), get_bipartite_nodeset(), igraph2pieGraph(), jam_igraph(), jam_plot_igraph(), label_communities(), layout_with_qfrf(), layout_with_qfr(), mem2emap(), memIM2cnet(), mem_multienrichplot(), nodegroups2communities(), rectifyPiegraph(), relayout_with_qfr(), removeIgraphBlanks(), removeIgraphSinglets(), reorderIgraphNodes(), rotate_igraph_layout(), spread_igraph_labels(), subgraph_jam(), subsetCnetIgraph(), subset_igraph_components(), sync_igraph_communities(), with_qfr()

jmw86069/multienrichjam documentation built on Nov. 3, 2024, 10:29 p.m.