color_nodes_by_nodegroups: Color edges by nodegroups

In jmw86069/multienrichjam: Analysis and Visualization of Multiple Gene Set Enrichments

Color edges by nodegroups

Description

Color edges by nodegroups

Usage

color_nodes_by_nodegroups(
  g,
  nodegroups,
  nodegroup_colors = NULL,
  node_alpha = NULL,
  Crange = c(60, 100),
  Lrange = c(45, 85),
  color_attributes = c("color"),
  verbose = TRUE,
  ...
)

Arguments

g	igraph object that contains vertex node attribute "color" as seen with igraph::vertex_attr(g, "color").
nodegroups	list or communities object that references nodes in g and assigns one or more to nodegroups.
verbose	logical indicating whether to print verbose output.
...	additional arguments are passed to colorjam::blend_colors().
edge_alpha	numeric or NULL, where numeric value sets the edge alpha transparency, where edge_alpha=0 is completely transparent, edge_alpha=0.5 is 50% transparent, and edge_alpha=1 is completely not transparent, and is opaque. When edge_alpha=NULL the alpha values are supplied by colorjam::blend_colors() which blends the two values.

Value

igraph object with edge color attribute updated to represent the result of blending node colors, seen by igraph::edge_attr(g)$color.

See Also

Other jam igraph functions: cnet2df(), cnet2im(), cnetplotJam(), cnetplot_internalJam(), color_edges_by_nodegroups(), color_edges_by_nodes_deprecated(), color_edges_by_nodes(), communities2nodegroups(), drawEllipse(), edge_bundle_bipartite(), edge_bundle_nodegroups(), enrichMapJam(), fixSetLabels(), flip_edges(), get_bipartite_nodeset(), igraph2pieGraph(), jam_igraph(), jam_plot_igraph(), label_communities(), layout_with_qfrf(), layout_with_qfr(), mem2emap(), memIM2cnet(), mem_multienrichplot(), nodegroups2communities(), rectifyPiegraph(), relayout_with_qfr(), removeIgraphBlanks(), removeIgraphSinglets(), reorderIgraphNodes(), rotate_igraph_layout(), spread_igraph_labels(), subgraph_jam(), subsetCnetIgraph(), subset_igraph_components(), sync_igraph_communities(), with_qfr()

jmw86069/multienrichjam documentation built on Feb. 7, 2024, 12:58 a.m.