enrichList2df: Convert enrichList to data.frame

In jmw86069/multienrichjam: Analysis and Visualization of Multiple Gene Set Enrichments

Convert enrichList to data.frame

Description

Convert enrichList to data.frame

Usage

enrichList2df(
  enrichList,
  keyColname = c("itemsetID", "ID", "Name"),
  geneColname = c("geneNames", "Genes"),
  geneCountColname = c("geneCount", "geneHits", "Count"),
  pvalueColname = c("P-value", "pvalue", "Pval"),
  pvalueFloor = 1e-200,
  msigdbGmtT = NULL,
  geneDelim = "[,/ ]",
  verbose = FALSE,
  debug = 0,
  ...
)

See Also

Other jam conversion functions: cnet2df(), cnet2im(), enrichDF2enrichResult(), enrichList2IM(), enrichMapJam()

jmw86069/multienrichjam documentation built on Feb. 7, 2024, 12:58 a.m.