enrichList2geneHitList: Extract gene hit list from list of enrichResult

In jmw86069/multienrichjam: Analysis and Visualization of Multiple Gene Set Enrichments

Extract gene hit list from list of enrichResult

Description

Extract gene hit list from list of enrichResult

Usage

enrichList2geneHitList(
  enrichList,
  geneColname,
  geneDelim = "[,/ ]",
  make_unique = TRUE,
  verbose = FALSE,
  ...
)

Details

This function is mainly for internal use in multienrichjam, it takes a list of enrichResult objects, and determines the full set of genes involved in each enrichResult.

This function also works with ComplexHeatmap::HeatmapList objects.

Value

list of character vectors, containing the unique set of genes involved in each enrichment.

See Also

Other jam utility functions: avg_angles(), avg_colors_by_list(), call_fn_ellipsis_deprecated(), cell_fun_bivariate(), collapse_mem_clusters(), colorRamp2D(), deconcat_df2(), display_colorRamp2D(), filter_mem_genes(), filter_mem_sets(), find_colname(), get_igraph_layout(), gsubs(), handle_igraph_param_list(), isColorBlank(), make_legend_bivariate(), make_point_hull(), mem_find_overlap(), order_colors(), rank_mem_clusters(), rotate_coordinates(), subgraph_jam(), subset_mem(), summarize_node_spacing(), xyAngle()

jmw86069/multienrichjam documentation built on Feb. 7, 2024, 12:58 a.m.