grid_with_title: Draw Heatmap with title and subtitle using grid viewports

In jmw86069/multienrichjam: Analysis and Visualization of Multiple Gene Set Enrichments

Draw Heatmap with title and subtitle using grid viewports

Description

Draw Heatmap with title and subtitle using grid viewports

Usage

grid_with_title(
  object,
  title = NULL,
  title_fontsize = 18,
  title_just = "centre",
  caption = NULL,
  caption_fontsize = 12,
  caption_just = "left",
  caption_x = NULL,
  verbose = FALSE,
  ...
)

Arguments

object	an object with class "Heatmap", "gTree", or any object where methods::hasMethod("draw", class(object)) is TRUE.
title	character string used as title. When NULL or nchar(title)==0 then no title is displayed.
title_fontsize	numeric value indicating the font size, with units "points".
title_just	character string indicating the justification (alignment) of the title.
caption, caption_fontsize, caption_just	arguments equivalent to the title_* arguments.
caption_x	numeric value in grid units specifying where to position the caption text. By default when caption_just is "left" the caption_x is defined by grid::unit(0.2, "npc"), which positions the caption at the left side (20% from the left edge) of the plot, with text proceeding to the right of that point.
verbose	logical indicating whether to print verbose output.
...	additional arguments are ignored.

Details

This function is likely to work only with grid or ComplexHeatmap input. Other objects that have draw() defined may not work properly.

Note: This function may be superceded by the ability to include an overall title when using ComplexHeatmap::draw(), which was not originally possible.

This function is intended to help make it easier to wrap a heatmap from ComplexHeatmap::Heatmap() inside the relevant grid viewports in order to display one large title at the top of the resulting visualization, and optionally one subtitle at the bottom of the visualization.

The input can be one heatmap (Heatmap object), or object of class "gTree", or any object with a method draw() associated with it, detected by methods::hasMethod("draw", class(object)).

A good example of "gTree" object is the result of calling draw() inside grid::grid.grabExpr(), for example:

grid::grid.grabExpr(ComplexHeatmap::draw(...))

The ComplexHeatmap::draw() function has extended capability for arranging one or more heatmaps and associated annotations.

Value

The byproduct of this function is to draw a grid visualization that includes a title and subtitle, then the object in the center.

See Also

Other jam plot functions: adjust_polygon_border(), jam_igraph(), mem_enrichment_heatmap(), mem_gene_path_heatmap(), mem_legend(), mem_multienrichplot(), mem_plot_folio(), plot_layout_scale()

jmw86069/multienrichjam documentation built on Nov. 3, 2024, 10:29 p.m.