jn-goe/gruffi: Gruffi identifies and removes stressed cells from brain organoid single-cell datasets.
The Gruffi R package helps you (1) to identify stressed cells in single-cell RNA-seq datasets using *granular funcitonal filtering*, and (2) you can use it to calculate any GO-term defined gene set's pathway activity. Gruffi integrates into single-cell analysis with Seurat and comes with a graphical user interface.
Getting started
Browse package contents
Package details |
|
|---|---|
| Author | Julia Naas <julia.naas@meduniwien.ac.at> [aut, cre]; Abel Vertesy <abel.vertesy@imba.oeaw.ac.at> [aut, cre] |
| Maintainer | |
| License | GPL-3 + file LICENSE |
| Version | 1.5.6 |
| Package repository | View on GitHub |
| Installation |
Install the latest version of this package by entering the following in R:
|
