AddGOGeneList.manual: AddGOGeneList.manual

In jn-goe/gruffi: Gruffi identifies and removes stressed cells from brain organoid single-cell datasets.

AddGOGeneList.manual

Description

Add a GO-term gene list under obj@misc$gruffi$GO$xxxx.

Usage

AddGOGeneList.manual(
  obj = combined.obj,
  GO = "GO:0034976",
  web.open = FALSE,
  genes = c("A0A140VKG3", "ARX", "CNTN2", "DRD1", "DRD2", "FEZF2", "LHX6")
)

Arguments

obj	Seurat single cell object, Default: combined.obj
GO	GO-term; Default: 'GO:0034976'
web.open	Open weblink, Default: FALSE
genes	Charcter vector of genes, Default: c("A0A140VKG3", "ARX", "CNTN2", "DRD1", "DRD2", "FEZF2", "LHX6")

See Also

iprint

jn-goe/gruffi documentation built on Nov. 7, 2024, 10:38 p.m.