dot-parse.GO: Parse GO Term from Granule-score Name

In jn-goe/gruffi: Gruffi identifies and removes stressed cells from brain organoid single-cell datasets.

Parse GO Term from Granule-score Name

Description

Splits a Granule-score column name into its clustering resolution and GO term, and returns the 2nd part, the GO Term.

Usage

.parse.GO(
  ident = "RNA_snn_res.6.reassigned_cl.av_GO:0006096",
  pattern = "_cl\\.av_|^Score.",
  ...
)

Arguments

ident	The column name to be split, e.g., 'RNA_snn_res.6.reassigned_cl.av_GO:0006096'.
pattern	The pattern to split by, default 'cl\.av'.
...	Additional arguments passed to strsplit.

Value

GO Term as string, e.g. "GO:0006096"

Examples

.parse.GO(ident = "RNA_snn_res.6.reassigned_cl.av_GO:0006096")

jn-goe/gruffi documentation built on Nov. 7, 2024, 10:38 p.m.