FeaturePlotSaveGO: FeaturePlotSaveGO

In jn-goe/gruffi: Gruffi identifies and removes stressed cells from brain organoid single-cell datasets.

FeaturePlotSaveGO

Description

Plot and save a Seurat FeaturePlot from a GO-score.

Usage

FeaturePlotSaveGO(
  obj = combined.obj,
  GO.score = "Score.GO.0034976",
  name_desc = NULL,
  save.plot = TRUE,
  title_ = paste(GO.score, name_desc),
  h = 7,
  PNG = TRUE,
  ...
)

Arguments

obj	Seurat single cell object, Default: combined.obj
GO.score	Metadata column name for a GO-term scoreDefault: 'Score.GO.0034976'
name_desc	Descriptive name to suffix plot and file name, Default: NULL
save.plot	Save plot into a file. Default: TRUE
title_	Plot title, Default: paste(GO.score, name_desc)
h	Plot height, Default: 7
PNG	Save as .png? Default: TRUE
...	Pass any other parameter to the internally called functions (most of them should work).

See Also

FeaturePlot labs ww.FnP_parser save_plot

jn-goe/gruffi documentation built on Nov. 7, 2024, 10:38 p.m.