AddCustomScore: AddCustomScore
In jn-goe/gruffi: Gruffi identifies and removes stressed cells from brain organoid single-cell datasets.
AddCustomScore R Documentation
AddCustomScore
Description
Add a custom gene expression score from a set of genes provided to the
Seurat single cell object. Calculates Score for gene set. Fixes name.
Usage
AddCustomScore(
obj = combined.obj,
genes = "",
assay.use = "RNA",
FixName = TRUE
)
Arguments
obj
Seurat single cell object, Default: combined.obj
genes
Charcter vector of genes, Default: ""
assay.use
Which assay to use for getting the genes? Default: 'RNA'.
FixName
Shall trailing "1" ar the end of the new column name be removed? Default: TRUE
See Also
AddModuleScore
jn-goe/gruffi documentation built on Nov. 7, 2024, 10:38 p.m.
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| AddCustomScore | R Documentation |
AddCustomScore
Description
Add a custom gene expression score from a set of genes provided to the Seurat single cell object. Calculates Score for gene set. Fixes name.
Usage
AddCustomScore(
obj = combined.obj,
genes = "",
assay.use = "RNA",
FixName = TRUE
)
Arguments
obj |
Seurat single cell object, Default: combined.obj |
genes |
Charcter vector of genes, Default: "" |
assay.use |
Which assay to use for getting the genes? Default: 'RNA'. |
FixName |
Shall trailing "1" ar the end of the new column name be removed? Default: TRUE |
See Also
AddModuleScore
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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