API for jn-goe/gruffi
Gruffi identifies and removes stressed cells from brain organoid single-cell datasets.
| Global functions | |
|---|---|
| .convert.GO_term.2.score | Man page Source code |
| .convert.score.2.GO_term | Man page Source code |
| .fix.metad.colname.rm.trailing.1 | Man page Source code |
| .parse.GO | Man page Source code |
| .round | Man page Source code |
| AddCustomScore | Man page Source code |
| AddGOGeneList.manual | Man page Source code |
| AddGOScore | Man page Source code |
| AssignGranuleAverageScoresFromGOterm | Man page Source code |
| Auto.GO.thresh | Source code |
| AutoFindGranuleResolution | Man page Source code |
| CalcClusterAverages_Gruffi | Man page Source code |
| CalcStandDevSkewedDistr | Man page Source code |
| CalcTranscriptomePercentage | Man page Source code |
| CalcTranscriptomePercentageGO | Man page Source code |
| CalculateAndPlotGoTermScores | Man page Source code |
| CalculateMedianClusterSize | Man page Source code |
| CleanDuplicateScorenames | Man page Source code |
| ClearGruffi | Man page Source code |
| ClusterUMAPthresholding | Man page Source code |
| CustomScoreEvaluation | Man page Source code |
| FeaturePlotSaveCustomScore | Man page Source code |
| FeaturePlotSaveGO | Man page Source code |
| FilterStressedCells | Man page Source code |
| FindThresholdsAuto | Man page Source code |
| FindThresholdsShiny | Man page Source code |
| GO_score_evaluation | Source code |
| GOscoreEvaluation | Source code |
| GetAllGOTermNames | Man page Source code |
| GetAllGOTerms | Source code |
| GetGOTerms | Man page Source code |
| GetGruffiClusteringName | Man page Source code |
| GrScoreHistogram | Man page Source code |
| GrScoreUMAP | Man page Source code |
| IntersectWithExpressed | Man page Source code |
| ParseGruffiGranuleScoreName | Man page Source code |
| PlotClustSizeDistr | Man page Source code |
| PlotGoTermScores | Source code |
| PlotNormAndSkew | Man page Source code |
| ReassignSmallClusters | Man page Source code |
| Shiny.GO.thresh | Source code |
| StressBarplotPerCluster | Man page Source code Source code |
| StressUMAP | Man page Source code |
| UMAP3Dcubes | Man page Source code |
| aut.res.clustering | Source code |
| calc.cluster.averages.gruff | Source code |
| fix.metad.colname.rm.trailing.1 | Source code |
| plot.clust.size.distr | Source code |
| plot_norm_and_skew | Source code |
| reassign.small.clusters | Source code |
| stand_dev_skewed | Source code |
| ww.convert.GO_term.2.score.Rd | Source code |
| ww.convert.score.2.GO_term.Rd | Source code |
