cr_add_subtype_specificity: Add subtype specificity columns in CR

In jokergoo/epik: Integrative Analysis and Visualization of Epigenomic Sequencing Data

Description

Add subtype specificity columns in CR

Usage

cr_add_subtype_specificity(cr, cutoff = 0.05, suffix = "_ss")

Arguments

cr	correlated regions
cutoff	cutoff for p-values of ANOVA test
suffix	suffix of column names

Details

If subgroup is set in correlated_regions, this function can assign subtype specificity to each subtype.

We use following digits to represent subtype specificity: 1 is defined as the methylation is higher than all other subtypes and the difference is significant. -1 is defined as the methylation is lower than all other subtypes and the difference is significant. All the others are defined as 0.

Value

A GRanges object

Author(s)

Zuguang Gu <[e-mail]>

Examples

# There is no example
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jokergoo/epik documentation built on Sept. 28, 2019, 9:20 a.m.