general_chipseq_association_to_methylation: General association between histone modifications and...
In jokergoo/epik: Integrative Analysis and Visualization of Epigenomic Sequencing Data

General association between histone modifications and methylations

1	general_chipseq_association_to_methylation(gr_list, gr_meth)

`gr_list`	a list of `GRanges` objects that each one corresponds to one histone modification Each `GRanges` object must have a `diff` column which is the signal difference in two groups. The object is usually from `hilbert_curve_chipseq_difference`.
`gr_meth`	a `GRanges` object which shows methylation difference in two groups. The object is usually from `hilbert_curve_methylation_difference`

Each histone mark corresponds to one panel. In each panel, there are two plots:

distribution of methylation difference in regions where histone mark signals are larger than corresponding quantile.
proportion of regions which show higher histone modification signal in group 1 and in group2.

no value is returned

Zuguang Gu <z.gu@dkfz.de>

1 2	# There is no example NULL

jokergoo/epik documentation built on Sept. 28, 2019, 9:20 a.m.

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