get_chromHMM_list: Get a list of chromatin segmentation regions
In jokergoo/epik: Integrative Analysis and Visualization of Epigenomic Sequencing Data
Description
Usage
Arguments
Details
Value
Author(s)
Examples
View source: R/read_data_hooks.R
Description
Get a list of chromatin segmentation regions
Usage
1
get_chromHMM_list(sample_id, ...)
Arguments
sample_id
a vector of sample IDs.
...
more arguments pass to chipseq_hooks$chromHMM().
Details
It works after chipseq_hooks is set.
Value
A list of GRanges objects.
If you e.g. set "chr" as the third argument when defining chipseq_hooks$peak(), "chr" can also be passed here through ....
Author(s)
Zuguang Gu <z.gu@dkfz.de>
Examples
1
2
# There is no example
NULL
jokergoo/epik documentation built on Sept. 28, 2019, 9:20 a.m.
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Description Usage Arguments Details Value Author(s) Examples
View source: R/read_data_hooks.R
Description
Get a list of chromatin segmentation regions
Usage
1 | get_chromHMM_list(sample_id, ...)
|
Arguments
sample_id |
a vector of sample IDs. |
... |
more arguments pass to |
Details
It works after chipseq_hooks is set.
Value
A list of GRanges objects.
If you e.g. set "chr" as the third argument when defining chipseq_hooks$peak(), "chr" can also be passed here through ....
Author(s)
Zuguang Gu <z.gu@dkfz.de>
Examples
1 2 | # There is no example
NULL
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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