get_sig_cr: Get significant CRs
In jokergoo/epik: Integrative Analysis and Visualization of Epigenomic Sequencing Data
Description
Usage
Arguments
Details
Value
Author(s)
Examples
View source: R/correlated_regions.R
Description
Get significant CRs
Usage
1
get_sig_cr(cr, fdr, meth_diff)
Arguments
cr
correlated regions
fdr
cutoff for FDRs
meth_diff
cutoff for methylation difference
Details
When there is no or only one subgroup, the filtering is cr$corr_fdr <= fdr & cr$meth_IQR >= meth_diff,
while when there is more than one subgroups, the filtering is cr$corr_fdr <= fdr & cr$meth_anova_fdr <= fdr & cr$meth_diameter >= meth_diff.
Value
Significant CRs. cr_reduce can be used to reduce number of regions.
Author(s)
Zuguang Gu <z.gu@dkfz.de>
Examples
1
2
# There is no example
NULL
jokergoo/epik documentation built on Sept. 28, 2019, 9:20 a.m.
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Description Usage Arguments Details Value Author(s) Examples
View source: R/correlated_regions.R
Description
Get significant CRs
Usage
1 | get_sig_cr(cr, fdr, meth_diff)
|
Arguments
cr |
correlated regions |
fdr |
cutoff for FDRs |
meth_diff |
cutoff for methylation difference |
Details
When there is no or only one subgroup, the filtering is cr$corr_fdr <= fdr & cr$meth_IQR >= meth_diff,
while when there is more than one subgroups, the filtering is cr$corr_fdr <= fdr & cr$meth_anova_fdr <= fdr & cr$meth_diameter >= meth_diff.
Value
Significant CRs. cr_reduce can be used to reduce number of regions.
Author(s)
Zuguang Gu <z.gu@dkfz.de>
Examples
1 2 | # There is no example
NULL
|
R Package Documentation
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We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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