API for jsilve24/philr
Phylogenetic partitioning based ILR transform for metagenomics data
| Global functions | |
|---|---|
| annotate_balance | Man page Source code |
| blw.mean.descendants.sum.children | Source code |
| blw.sum.children | Source code |
| build.phylo.ilr | Man page |
| buildilrBasep | Man page Source code |
| calc.blw | Man page |
| calculate.blw | Man page Source code |
| check.zeroes | Source code |
| clrp | Man page Source code |
| clrpInv | Man page Source code |
| convert_to_long | Man page Source code |
| g.colMeans | Man page Source code |
| g.rowMeans | Man page Source code |
| get.ud.nodes | Source code |
| get.ud.tips | Source code |
| ilrp | Man page Source code |
| ilrpInv | Man page Source code |
| inner.prodp | Source code |
| mean_dist_to_tips | Man page Source code |
| miniclo | Man page Source code |
| name.balance | Man page Source code |
| name.to.nn | Man page Source code |
| name_nodenumber_conversion | Man page |
| named_rtree | Man page Source code |
| nn.to.name | Man page Source code |
| normp | Source code |
| philr | Man page Source code |
| philr.TreeSummarizedExperiment | Source code |
| philr.array | Source code |
| philr.data.frame | Source code |
| philr.default | Source code |
| philr.matrix | Source code |
| philr.numeric | Source code |
| philr.phyloseq | Source code |
| philrInv | Man page Source code |
| phylo2sbp | Man page |
| shift | Man page |
| shiftp | Man page Source code |
| shiftpInv | Man page Source code |
| tally.votes | Source code |
| vec_to_mat | Source code |
| vote.annotation | Source code |
