jwfoley/bioanalyzeR
Analysis of Agilent electrophoresis data

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Files in jwfoley/bioanalyzeR
Analysis of Agilent electrophoresis data

.Rbuildignore
.gitignore
DESCRIPTION
LICENSE
NAMESPACE
R/bioanalyzer.R R/calibration.R R/electrophoresis.R R/ggplot.R R/integration.R R/prosize.R R/summary.R R/tapestation.R README.md inst/bin/bioanalyze.R
inst/extdata/bioanalyzer/Demo DNA 1000 Series II.xml.gz
inst/extdata/bioanalyzer/Demo DNA 12000 Series II.xml.gz
inst/extdata/bioanalyzer/Demo DNA 7500 Series II.xml.gz
inst/extdata/bioanalyzer/Demo Eukaryote Total RNA Nano Series II.xml.gz
inst/extdata/bioanalyzer/Demo Eukaryote Total RNA Pico Series II.xml.gz
inst/extdata/bioanalyzer/Demo High Sensitivity DNA.xml.gz
inst/extdata/bioanalyzer/Demo Plant RNA Nano.xml.gz
inst/extdata/bioanalyzer/Demo Plant RNA Pico.xml.gz
inst/extdata/bioanalyzer/Demo Prokaryote Total RNA Nano Series II.xml.gz
inst/extdata/bioanalyzer/Demo Prokaryote Total RNA Pico Series II.xml.gz
inst/extdata/bioanalyzer/Demo mRNA Nano Series II.xml.gz
inst/extdata/bioanalyzer/Demo mRNA Pico Series II.xml.gz
inst/extdata/femtopulse/FP-1002 gDNA 165 kb/Yeast Extractions 165Kb EXT F12102 12-41-55.zip
inst/extdata/femtopulse/FP-1002 gDNA 165 kb/Yeast Extractions 165Kb Fast F12102 17-27-23.zip
inst/extdata/femtopulse/FP-1003 55 Kb BAC/17-54-18.zip
inst/extdata/femtopulse/FP-1101 US NGS/300 bp dilution series 21-30-31.zip
inst/extdata/femtopulse/FP-1101 US NGS/Smear dilution 15-49-01.zip
inst/extdata/femtopulse/FP-1201 US RNA/FP-1201 Mouse mRNA Dilution Series.zip
inst/extdata/femtopulse/FP-1201 US RNA/FP-1201 Univeral Mouse Ref Total RNA Dilution Series.zip
inst/extdata/fragmentanalyzer/DNF-464 HS Large Fragment/Long read library final QC 18-12-47.zip
inst/extdata/fragmentanalyzer/DNF-467 Genomic 50 kb/16-30-38.zip
inst/extdata/fragmentanalyzer/DNF-467 Genomic 50 kb/21-54-28.zip
inst/extdata/fragmentanalyzer/DNF-468 HS Genomic 50 kb/Human gDNA 38 15-0.2 ng series DNF-468 kit 12Cap 33cm Array 12-26-43.zip
inst/extdata/fragmentanalyzer/DNF-470 Small RNA/17-44-37.zip
inst/extdata/fragmentanalyzer/DNF-471 RNA kit 15nt/DNF-471-33 E. coli Total RNA Dilution Series 12-22-09.zip
inst/extdata/fragmentanalyzer/DNF-472 HS RNA kit 15nt/DNF-472M Mouse & Rat mRNA dilutions.zip
inst/extdata/fragmentanalyzer/DNF-472 HS RNA kit 15nt/RNA Degradation Study 12-03-13.zip
inst/extdata/fragmentanalyzer/DNF-472 HS RNA kit 15nt/sample dilution series 20-07-57.zip
inst/extdata/fragmentanalyzer/DNF-473 NGS Fragment kit (1-6000)/NGS Libraries SS NGS kit 19-10-40.zip
inst/extdata/fragmentanalyzer/DNF-474 HS NGS (1-6000)/DNA smear dilution series 10-39-02.zip
inst/extdata/fragmentanalyzer/DNF-474 HS NGS (1-6000)/Final NGS library QC 11-32-01.zip
inst/extdata/fragmentanalyzer/DNF-474 HS NGS (1-6000)/SureSelect library with primer dimer 16-38-33.zip
inst/extdata/fragmentanalyzer/DNF-476 Small Fragment (1-1500)/DNF-476 SS Small Fragment Kit sRNA Lib Demo Data 17-23-42.zip
inst/extdata/fragmentanalyzer/DNF-477 HS Small Fragment (1-1500)/Small DNA smear 19-18-22.zip
inst/extdata/fragmentanalyzer/DNF-477 HS Small Fragment (1-1500)/cfDNA 15-22-09.zip
inst/extdata/fragmentanalyzer/DNF-910CP CRISPR Gel Discovery/2017 02 08 12H 18M.zip
inst/extdata/fragmentanalyzer/DNF-915 dsDNA (35-5000)/Arabidopsis genotyping 16-33-12.zip
inst/extdata/fragmentanalyzer/DNF-920 dsDNA (75-15000)/10-34-17.zip
inst/extdata/fragmentanalyzer/DNF-930 dsDNA (35-5000)/14-58-36.zip
inst/extdata/tapestation/D1000-Plate-96-D1000.xml.gz
inst/extdata/tapestation/D1000-Plate-96-D1000_Electropherogram.csv.gz
inst/extdata/tapestation/D1000-Plate-96.annotations.csv
inst/extdata/tapestation/D1000-Tubes-16-D1000.xml.gz
inst/extdata/tapestation/D1000-Tubes-16-D1000_Electropherogram.csv.gz
inst/extdata/tapestation/D5000-Plate-96-D5000.xml.gz
inst/extdata/tapestation/D5000-Plate-96-D5000_Electropherogram.csv.gz
inst/extdata/tapestation/D5000-Tubes-16-D5000.xml.gz
inst/extdata/tapestation/D5000-Tubes-16-D5000_Electropherogram.csv.gz
inst/extdata/tapestation/Eukaryotic RNA-Plate-64-RNA.xml.gz
inst/extdata/tapestation/Eukaryotic RNA-Plate-64-RNA_Electropherogram.csv.gz
inst/extdata/tapestation/Eukaryotic RNA-Tubes-16-RNA.xml.gz
inst/extdata/tapestation/Eukaryotic RNA-Tubes-16-RNA_Electropherogram.csv.gz
inst/extdata/tapestation/HSD1000-HaloplexHS-4-HSD1000.xml.gz
inst/extdata/tapestation/HSD1000-HaloplexHS-4-HSD1000_Electropherogram.csv.gz
inst/extdata/tapestation/HSD5000-SureSelectQXT-3-HSD5000.xml.gz
inst/extdata/tapestation/HSD5000-SureSelectQXT-3-HSD5000_Electropherogram.csv.gz
inst/extdata/tapestation/High Sensitivity D1000-Tubes-16-HSD1000.xml.gz
inst/extdata/tapestation/High Sensitivity D1000-Tubes-16-HSD1000_Electropherogram.csv.gz
inst/extdata/tapestation/High Sensitivity D5000-Tubes-16-HSD5000.xml.gz
inst/extdata/tapestation/High Sensitivity D5000-Tubes-16-HSD5000_Electropherogram.csv.gz
inst/extdata/tapestation/High Sensitivity Eukaryotic RNA-Plate-96-HSRNA.xml.gz
inst/extdata/tapestation/High Sensitivity Eukaryotic RNA-Plate-96-HSRNA_Electropherogram.csv.gz
inst/extdata/tapestation/High Sensitivity Eukaryotic RNA-Tubes-16-HSRNA.xml.gz
inst/extdata/tapestation/High Sensitivity Eukaryotic RNA-Tubes-16-HSRNA_Electropherogram.csv.gz
inst/extdata/tapestation/Prokaryotic RNA-Plate-32-RNA.xml.gz
inst/extdata/tapestation/Prokaryotic RNA-Plate-32-RNA_Electropherogram.csv.gz
inst/extdata/tapestation/cfDNA-Plate-96-cfDNA.xml.gz
inst/extdata/tapestation/cfDNA-Plate-96-cfDNA_Electropherogram.csv.gz
inst/extdata/tapestation/cfDNA-Tubes-16-cfDNA.xml.gz
inst/extdata/tapestation/cfDNA-Tubes-16-cfDNA_Electropherogram.csv.gz
inst/extdata/tapestation/gDNA-Plate-96-gDNA.xml.gz
inst/extdata/tapestation/gDNA-Plate-96-gDNA_Electropherogram.csv.gz
inst/extdata/tapestation/gDNA-Tubes-16-gDNA.xml.gz
inst/extdata/tapestation/gDNA-Tubes-16-gDNA_Electropherogram.csv.gz
inst/extdata/zag/ZAG-105 dsDNA (1-500)/10-23-09.zip
inst/extdata/zag/ZAG-105 dsDNA (1-500)/11-34-22.zip
inst/extdata/zag/ZAG-110 dsDNA (35-5000)/10-25-24.zip
inst/extdata/zag/ZAG-130 dsDNA (75-20000)/ZAG-130 GP 20-53-59.zip
inst/extdata/zag/ZAG-135 dsDNA (1-1500)/09-45-24.zip
man/annotate.electrophoresis.Rd man/between.markers.Rd man/calibrate.electrophoresis.Rd man/differential.scale.Rd man/dv200.Rd man/electrophoresis.Rd man/get.x.name.Rd man/illumina.library.ratio.Rd man/in.custom.region.Rd man/in.peak.region.Rd man/in.peaks.regions.Rd man/integrate.custom.Rd man/integrate.peak.region.Rd man/labeller.electrophoresis.Rd man/molecular.weight.Rd man/normalize.proportion.Rd man/qc.electrophoresis.Rd man/qplot.electrophoresis.Rd man/rawplot.electrophoresis.Rd man/rbind.electrophoresis.Rd man/read.electrophoresis.Rd man/read.prosize.electropherogram.Rd man/read.prosize.peaks.Rd man/read.prosize.regions.Rd man/read.tapestation.csv.Rd man/read.tapestation.xml.Rd man/region.ratio.Rd man/sparkline.electrophoresis.Rd man/stdcrv.mobility.Rd man/subset.electrophoresis.Rd man/summarize.custom.Rd man/summarize.peak.region.Rd man/summarize.subset.Rd man/variable.label.Rd man/violin.electrophoresis.Rd
vignettes/.gitignore
vignettes/agilent_electropherogram_screenshot.png
vignettes/bioanalyzeR.Rmd
vignettes/export_csv_screenshot.png
vignettes/export_prosize_screenshot.png
vignettes/peak_table_screenshot.png
jwfoley/bioanalyzeR documentation built on Aug. 1, 2023, 4:46 a.m.

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