rawplot.electrophoresis: Plots of raw electrophoresis data

In jwfoley/bioanalyzeR: Analysis of Agilent electrophoresis data

Plots of raw electrophoresis data

Description

This function is a shortcut that calls qplot.electrophoresis with customized settings to show the raw data analogously to the Agilent software.

Usage

rawplot.electrophoresis(
  electrophoresis,
  include.markers = TRUE,
  xlab = NULL,
  ...
)

Arguments

include.markers	Passed to qplot.electrophoresis but the default is TRUE.
...	Arguments passed to qplot.electrophoresis.

Details

The x-variable is set to the aligned migration time or relative migration distance, depending on platform. The y-variable is set to fluorescence. In addition to the hardcoded default arguments for qplot.electrophoresis, the x-axis scale is marked with the positions of the ladder peaks and labeled by their lengths, and the following settings are added with theme:

panel.grid.minor.x = element_blank(),
axis.text.x = element_text(angle = 45, hjust = 1)

See Also

qplot.electrophoresis

jwfoley/bioanalyzeR documentation built on Aug. 1, 2023, 4:46 a.m.