region.ratio: Compare sums within regions

In jwfoley/bioanalyzeR: Analysis of Agilent electrophoresis data

Compare sums within regions

Description

Given two or more regions (pairs of lower and upper bounds), calculate the ratio of the integrated sum of each additional region relative to the integrated sum of the first region. The ratio is computed individually for each sample.

Usage

region.ratio(
  electrophoresis,
  ...,
  bound.variable = "length",
  sum.variable = "molarity"
)

Arguments

electrophoresis	An electrophoresis object.
...	Two or more pairs (vectors) of boundaries, e.g. c(100, 200), c(200, 500), c(500, 700).
bound.variable	Which variable the boundaries refer to.
sum.variable	Which variable to sum in each region.

Value

A matrix of ratios of sums within the regions, each region relative to the first region, for each sample.

See Also

integrate.custom, dv200, illumina.library.ratio

jwfoley/bioanalyzeR documentation built on Aug. 1, 2023, 4:46 a.m.