stdcrv.mobility: Plot mobility standard curves

In jwfoley/bioanalyzeR: Analysis of Agilent electrophoresis data

Plot mobility standard curves

Description

This function is a shortcut to plot the standard curve(s) of molecule length vs. migration speed from an electrophoresis object, wrapping ggplot. This allows you to check the quality of the model.

Usage

stdcrv.mobility(electrophoresis, n.simulate = 100, line.color = "red")

Arguments

electrophoresis	An electrophoresis object.
n.simulate	Number of data points to simulate for drawing the standard curve.
line.color	Color of the standard curve and data points.

Details

The positions of the ladder peaks reported by the Agilent software are shown in the selected color, and the fluorescence intensites within the peak boundaries are also plotted. If there are multiple ladders, each is shown as a separate facet.

Value

A ggplot object containing several layers. You can draw it directly or customize it like any other ggplot object by adding more layers.

See Also

qc.electrophoresis

jwfoley/bioanalyzeR documentation built on Aug. 1, 2023, 4:46 a.m.