SiftCellMix: This function runs SiftCellMix
In jyxi7676/SiftCell: SiftCell framework to identify cell containing and cell free droplets
SiftCellMix R Documentation
This function runs SiftCellMix
Description
This function runs SiftCellMix
Usage
SiftCellMix(
workingdir,
celltype,
alpha = 0.01,
threshold = 100,
ub_p = 1,
lb_p = 0
)
Arguments
workingdir
directory with DGE files
celltype
dataframe with two columns, 1st column is cell barcode, 2nd column is cell type
alpha
scalar between 0 and 1
threshold
focus on droplets with UMI>threshold
ub_p
upper bound of proportion. Default is 1
lb_p
lower bound of proportion. Default is 0
Value
estimated proportion
jyxi7676/SiftCell documentation built on July 27, 2023, 7:13 a.m.
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| SiftCellMix | R Documentation |
This function runs SiftCellMix
Description
This function runs SiftCellMix
Usage
SiftCellMix(
workingdir,
celltype,
alpha = 0.01,
threshold = 100,
ub_p = 1,
lb_p = 0
)
Arguments
workingdir |
directory with DGE files |
celltype |
dataframe with two columns, 1st column is cell barcode, 2nd column is cell type |
alpha |
scalar between 0 and 1 |
threshold |
focus on droplets with UMI>threshold |
ub_p |
upper bound of proportion. Default is 1 |
lb_p |
lower bound of proportion. Default is 0 |
Value
estimated proportion
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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