detectFlagCells: The function detects the droplet barcode that are flag Cells...
In jyxi7676/SiftCell: SiftCell framework to identify cell containing and cell free droplets
View source: R/SiftCellBoost.R
detectFlagCells R Documentation
The function detects the droplet barcode that are flag Cells marked by its expression of flag genes>median+3sd
Description
The function detects the droplet barcode that are flag Cells marked by its expression of flag genes>median+3sd
Usage
detectFlagCells(rawDGE, mitoGenes = TRUE, otherFlagGenes = NULL)
Arguments
rawDGE
the originalDGE that returned from prepareData function
mitoGenes
If TRUE, mitochondrial genes will be flagged genes, regardless of mouse mt or human mt.
otherFlagGenes
specify the genes that needs to be flagged by user. the function automatically detect flagcells by mitochondrial genes. This parameter gives
extra flaggens that characterize unwanted cells.
Value
this function returns a vector with barcodes of flag cells
jyxi7676/SiftCell documentation built on July 27, 2023, 7:13 a.m.
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View source: R/SiftCellBoost.R
| detectFlagCells | R Documentation |
The function detects the droplet barcode that are flag Cells marked by its expression of flag genes>median+3sd
Description
The function detects the droplet barcode that are flag Cells marked by its expression of flag genes>median+3sd
Usage
detectFlagCells(rawDGE, mitoGenes = TRUE, otherFlagGenes = NULL)
Arguments
rawDGE |
the originalDGE that returned from prepareData function |
mitoGenes |
If TRUE, mitochondrial genes will be flagged genes, regardless of mouse mt or human mt. |
otherFlagGenes |
specify the genes that needs to be flagged by user. the function automatically detect flagcells by mitochondrial genes. This parameter gives extra flaggens that characterize unwanted cells. |
Value
this function returns a vector with barcodes of flag cells
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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