prepData: The function prepares data for Original and shuffled DGE
In jyxi7676/SiftCell: SiftCell framework to identify cell containing and cell free droplets
View source: R/SiftCellBoost.R
prepData R Documentation
The function prepares data for Original and shuffled DGE
Description
The function prepares data for Original and shuffled DGE
Usage
prepData(workingdir, UMIthreshold = 100)
Arguments
workingdir
the working directory with two folders named DGE and shuffleDGE. The shuffleDGE canbe
generated byxxx
UMIthreshold
a UMI cutoff that filter out droplet with total UMI below the cutoff
Value
the function returns a list of matrix:originalDGE and shuffleDGE of droplets with UMI bigger or
equal than the UMI threshold. In addition a matrix with all droplets is also returned.
jyxi7676/SiftCell documentation built on July 27, 2023, 7:13 a.m.
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View source: R/SiftCellBoost.R
| prepData | R Documentation |
The function prepares data for Original and shuffled DGE
Description
The function prepares data for Original and shuffled DGE
Usage
prepData(workingdir, UMIthreshold = 100)
Arguments
workingdir |
the working directory with two folders named DGE and shuffleDGE. The shuffleDGE canbe generated byxxx |
UMIthreshold |
a UMI cutoff that filter out droplet with total UMI below the cutoff |
Value
the function returns a list of matrix:originalDGE and shuffleDGE of droplets with UMI bigger or equal than the UMI threshold. In addition a matrix with all droplets is also returned.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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