getGeneProfile: This function get the gene profile
In jyxi7676/SiftCell: SiftCell framework to identify cell containing and cell free droplets
getGeneProfile R Documentation
This function get the gene profile
Description
This function get the gene profile
Usage
getGeneProfile(mtx, mtx_threshold, celltype, alpha = 0.01, threshold)
Arguments
mtx
DGE matrix
mtx_threshold
DGE matrix with colsums > threshold
celltype
dataframe with celltype information, 1st coloum is barcode, 2nd column is celltype
alpha
scale between 0 and 1 used to adjust 0 value in gene profile for droplets with celltype infomation
threshold
umi cut off
Value
a matrix with gene profile for all the celltypes and soup
jyxi7676/SiftCell documentation built on July 27, 2023, 7:13 a.m.
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| getGeneProfile | R Documentation |
This function get the gene profile
Description
This function get the gene profile
Usage
getGeneProfile(mtx, mtx_threshold, celltype, alpha = 0.01, threshold)
Arguments
mtx |
DGE matrix |
mtx_threshold |
DGE matrix with colsums > threshold |
celltype |
dataframe with celltype information, 1st coloum is barcode, 2nd column is celltype |
alpha |
scale between 0 and 1 used to adjust 0 value in gene profile for droplets with celltype infomation |
threshold |
umi cut off |
Value
a matrix with gene profile for all the celltypes and soup
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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