runPCA: The function get the top 100 PC of HVG for both original and...

In jyxi7676/SiftCell: SiftCell framework to identify cell containing and cell free droplets

The function get the top 100 PC of HVG for both original and shuffled DGE

Description

The function get the top 100 PC of HVG for both original and shuffled DGE

Usage

runPCA(
  rawDGE,
  shfDGE,
  HVG,
  log = TRUE,
  dataName,
  retx = TRUE,
  center = TRUE,
  scale = TRUE,
  N.PCs = 100
)

Arguments

rawDGE	original DGE
shfDGE	shuffled DGE
HVG	dataframe with gene name, tarones statistic(out)
log	log Normalized the data. This is true by default.
dataName	the dataName of the dataset. For example:PBMC, Brain
retx	TRUE
center	whether to center the data
scale	whther to scale the data
N.PCs	number of PCs

Value

the funtion returns PCs of rawDGE and shfDGE

jyxi7676/SiftCell documentation built on July 27, 2023, 7:13 a.m.